PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 7D5X designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 7D5X_PGV_A_608 | 86% | 43% | 0.106 | 0.976 | 1.08 | 1.14 | 4 | 6 | 5 | 0 | 100% | 1 |
| 7D5X_PGV_C_306 | 82% | 52% | 0.115 | 0.972 | 0.84 | 1.02 | 2 | 5 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_N_610 | 80% | 41% | 0.115 | 0.965 | 1.04 | 1.27 | 3 | 6 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_P_306 | 79% | 46% | 0.121 | 0.968 | 0.79 | 1.27 | 2 | 4 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_Q_201 | 25% | 42% | 0.184 | 0.869 | 0.86 | 1.37 | 1 | 3 | 4 | 0 | 73% | 0.7255 |
| 7D5X_PGV_A_606 | 24% | 68% | 0.186 | 0.876 | 0.52 | 0.7 | - | 1 | 3 | 0 | 65% | 0.6471 |
| 7D5X_PGV_C_307 | 20% | 37% | 0.186 | 0.838 | 0.95 | 1.49 | 1 | 5 | 1 | 0 | 73% | 0.7255 |
| 7D5X_PGV_P_307 | 13% | 40% | 0.2 | 0.78 | 1 | 1.32 | 1 | 4 | 3 | 0 | 75% | 0.7451 |
| 5B1A_PGV_P_303 | 98% | 35% | 0.064 | 0.985 | 1.06 | 1.51 | 3 | 13 | 4 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 95% | 52% | 0.078 | 0.981 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 7COH_PGV_C_267 | 93% | 49% | 0.087 | 0.983 | 0.87 | 1.09 | 3 | 3 | 0 | 0 | 100% | 1 |
| 5ZCQ_PGV_N_608 | 90% | 32% | 0.094 | 0.978 | 1.15 | 1.53 | 5 | 8 | 1 | 0 | 100% | 1 |
