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2IDB	Download File View File

Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.

Zhou, W., Forouhar, F., Seetharaman, J., Fang, Y., Xiao, R., Cunningham, K., Ma, L.-C., Chen, C.X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)
Unique Ligands	1PE, EDO

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5M1B	Download File View File

Crystal structure of C-terminally tagged apo-UbiD from E. coli

White, M., Leys, D.

(2017) J Biological Chem 292: 4623-4637

Released	2017-01-11
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli CFT073
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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5M1C	Download File View File

Crystal structure of N-terminally tagged apo-UbiD from E. coli

Marshall, S.A., Leys, D.

(2017) J Biological Chem 292: 4623-4637

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Escherichia coli CFT073
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)
Unique Ligands	PG4

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5M1D	Download File View File

Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor

Marshall, S.A., Leys, D.

(2017) J Biological Chem 292: 4623-4637

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)
Unique Ligands	4LU, MN, NA, SO4

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5M1E	Download File View File

Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor

Marshall, S.A., Leys, D.

(2017) J Biological Chem 292: 4623-4637

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Escherichia coli CFT073
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)
Unique Ligands	7D9, MN, NA

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6H6V	Download File View File

Structure of the UbiD-class enzyme HmfF from Pelotomaculum thermopropionicum in complex with FMN

Payne, K.A.P., Leys, D.

(2019) ACS Catal 9: 2854-2865

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Pelotomaculum thermopropionicum SI
Macromolecule	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases (protein)
Unique Ligands	CA, FMN, K, MN

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6H6X	Download File View File

Structure of an evolved dimeric form of the UbiD-class enzyme HmfF from Pelotomaculum thermopropionicum in complex with prFMN

Payne, K.A.P., Leys, D.

(2019) ACS Catal 9: 2854-2865

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Pelotomaculum thermopropionicum SI
Macromolecule	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases (protein)
Unique Ligands	4LU, CA, K, MN

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AF_AFA0A0H3GKH2F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A0A0H3GKH2-F1
pLDDT (global)	92.97
Organisms	Klebsiella pneumoniae subsp. pneumoniae HS11286
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA0KEH3F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A0KEH3-F1
pLDDT (global)	93.45
Organisms	Aeromonas hydrophila subsp. hydrophila ATCC 7966
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA0KSH7F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A0KSH7-F1
pLDDT (global)	93.37
Organisms	Shewanella sp. ANA-3
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1AI30F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1AI30-F1
pLDDT (global)	92.74
Organisms	Escherichia coli APEC O1
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1JIG1F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1JIG1-F1
pLDDT (global)	92.7
Organisms	Yersinia enterocolitica subsp. enterocolitica 8081
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1KBR8F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1KBR8-F1
pLDDT (global)	93.74
Organisms	Azoarcus olearius
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1KVA2F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1KVA2-F1
pLDDT (global)	93.57
Organisms	Neisseria meningitidis FAM18
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1RFJ5F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1RFJ5-F1
pLDDT (global)	93.05
Organisms	Shewanella sp. W3-18-1
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1S2N0F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1S2N0-F1
pLDDT (global)	93
Organisms	Shewanella amazonensis SB2B
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1SZG1F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1SZG1-F1
pLDDT (global)	93.65
Organisms	Psychromonas ingrahamii 37
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1TXW4F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1TXW4-F1
pLDDT (global)	93.03
Organisms	Marinobacter nauticus VT8
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA1WZD4F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A1WZD4-F1
pLDDT (global)	93.44
Organisms	Halorhodospira halophila SL1
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA3CZT2F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A3CZT2-F1
pLDDT (global)	93.17
Organisms	Shewanella baltica OS155
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA3N287F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A3N287-F1
pLDDT (global)	92.81
Organisms	Actinobacillus pleuropneumoniae serovar 5b str. L20
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA3Q9T4F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A3Q9T4-F1
pLDDT (global)	93.33
Organisms	Shewanella loihica PV-4
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA4G3Y4F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A4G3Y4-F1
pLDDT (global)	93.16
Organisms	Herminiimonas arsenicoxydans
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA4STJ3F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A4STJ3-F1
pLDDT (global)	93.68
Organisms	Aeromonas salmonicida subsp. salmonicida A449
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)