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4HN8	Download File View File

Crystal structure of a putative D-glucarate dehydratase from Pseudomonas mendocina ymp

Hegde, R.P., Toro, R., Burley, S.K., Almo, S.C., Ramagopal, U.A., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	D-glucarate dehydratase (protein)
Unique Ligands	GOL

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5LTE	Download File View File

Crystal structure of the alpha subunit of heme dependent oxidative N-demethylase (HODM)

Ortmayer, M., Leys, D.

(2016) Nature 539: 593-597

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	heme dependent oxidative N-demethylase (protein)
Unique Ligands	ETX, HEM, NA

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AF_AFA4XN62F1	Download File

Computed structure model of DNA replication and repair protein RecF

AlphaFold DB	AF-A4XN62-F1
pLDDT (global)	93.01
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	DNA replication and repair protein RecF (protein)

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AF_AFA4XN72F1	Download File

Computed structure model of Glycine--tRNA ligase beta subunit

AlphaFold DB	AF-A4XN72-F1
pLDDT (global)	94.79
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Glycine--tRNA ligase beta subunit (protein)

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AF_AFA4XN73F1	Download File

Computed structure model of Glycine--tRNA ligase alpha subunit

AlphaFold DB	AF-A4XN73-F1
pLDDT (global)	95.77
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Glycine--tRNA ligase alpha subunit (protein)

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AF_AFA4XNB2F1	Download File

Computed structure model of Methionyl-tRNA formyltransferase

AlphaFold DB	AF-A4XNB2-F1
pLDDT (global)	96.52
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Methionyl-tRNA formyltransferase (protein)

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AF_AFA4XNB3F1	Download File

Computed structure model of Peptide deformylase

AlphaFold DB	AF-A4XNB3-F1
pLDDT (global)	97.62
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Peptide deformylase (protein)

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AF_AFA4XNB6F1	Download File

Computed structure model of Threonylcarbamoyl-AMP synthase

AlphaFold DB	AF-A4XNB6-F1
pLDDT (global)	95.51
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Threonylcarbamoyl-AMP synthase (protein)

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AF_AFA4XNB8F1	Download File

Computed structure model of Oxygen-dependent coproporphyrinogen-III oxidase

AlphaFold DB	AF-A4XNB8-F1
pLDDT (global)	95.78
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Oxygen-dependent coproporphyrinogen-III oxidase (protein)

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AF_AFA4XNB9F1	Download File

Computed structure model of Shikimate dehydrogenase (NADP(+))

AlphaFold DB	AF-A4XNB9-F1
pLDDT (global)	96.38
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Shikimate dehydrogenase (NADP(+)) (protein)

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AF_AFA4XNC8F1	Download File

Computed structure model of Tryptophan synthase alpha chain

AlphaFold DB	AF-A4XNC8-F1
pLDDT (global)	94.15
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Tryptophan synthase alpha chain (protein)

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AF_AFA4XND8F1	Download File

Computed structure model of UPF0391 membrane protein Pmen_0080

AlphaFold DB	AF-A4XND8-F1
pLDDT (global)	88.56
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	UPF0391 membrane protein Pmen_0080 (protein)

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AF_AFA4XNJ7F1	Download File

Computed structure model of Glutaminase

AlphaFold DB	AF-A4XNJ7-F1
pLDDT (global)	96.25
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Glutaminase (protein)

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AF_AFA4XNK8F1	Download File

Computed structure model of Protoheme IX farnesyltransferase

AlphaFold DB	AF-A4XNK8-F1
pLDDT (global)	90.79
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Protoheme IX farnesyltransferase (protein)

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AF_AFA4XNL3F1	Download File

Computed structure model of Probable GTP-binding protein EngB

AlphaFold DB	AF-A4XNL3-F1
pLDDT (global)	89.48
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Probable GTP-binding protein EngB (protein)

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AF_AFA4XNV3F1	Download File

Computed structure model of D-amino acid dehydrogenase

AlphaFold DB	AF-A4XNV3-F1
pLDDT (global)	93.3
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	D-amino acid dehydrogenase (protein)

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AF_AFA4XNV9F1	Download File

Computed structure model of Xanthine phosphoribosyltransferase

AlphaFold DB	AF-A4XNV9-F1
pLDDT (global)	94.76
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Xanthine phosphoribosyltransferase (protein)

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AF_AFA4XNX4F1	Download File

Computed structure model of Diaminopimelate epimerase

AlphaFold DB	AF-A4XNX4-F1
pLDDT (global)	95.7
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Diaminopimelate epimerase (protein)

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AF_AFA4XNX7F1	Download File

Computed structure model of Iron-sulfur cluster assembly protein CyaY

AlphaFold DB	AF-A4XNX7-F1
pLDDT (global)	96.31
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Iron-sulfur cluster assembly protein CyaY (protein)

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AF_AFA4XNY5F1	Download File

Computed structure model of Argininosuccinate lyase

AlphaFold DB	AF-A4XNY5-F1
pLDDT (global)	95.96
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Argininosuccinate lyase (protein)

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AF_AFA4XP02F1	Download File

Computed structure model of UPF0178 protein Pmen_0294

AlphaFold DB	AF-A4XP02-F1
pLDDT (global)	94.64
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	UPF0178 protein Pmen_0294 (protein)

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AF_AFA4XP18F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-A4XP18-F1
pLDDT (global)	93.72
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFA4XP32F1	Download File

Computed structure model of UPF0149 protein Pmen_0324

AlphaFold DB	AF-A4XP32-F1
pLDDT (global)	91.77
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	UPF0149 protein Pmen_0324 (protein)

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AF_AFA4XP44F1	Download File

Computed structure model of Agmatine deiminase

AlphaFold DB	AF-A4XP44-F1
pLDDT (global)	97.96
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Agmatine deiminase (protein)

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AF_AFA4XP61F1	Download File

Computed structure model of Amino-acid acetyltransferase

AlphaFold DB	AF-A4XP61-F1
pLDDT (global)	92.08
Organisms	Ectopseudomonas mendocina ymp
Macromolecule	Amino-acid acetyltransferase (protein)

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