RCSB PDB: Search

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3DKU	Download File View File

Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1

Hong, M.K., Kim, J.K., Jung, J.H., Jung, J.W., Choi, J.Y., Kang, L.W.

To be published

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Escherichia coli APEC O1
Macromolecule	Putative phosphohydrolase (protein)

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3SHD	Download File View File

Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1

Hong, M.K., Kim, J.K., Kang, L.W.

To be published

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli APEC O1
Macromolecule	Phosphatase nudJ (protein)
Unique Ligands	MN, SO4

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4DY4	Download File View File

High resolution structure of E.coli WrbA with FMN

Kishko, I., Brynda, J., Kuta Smatanova, I., Ettrich, R., Carey, J.

To be published

Released	2013-03-06
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Escherichia coli APEC O1
Macromolecule	Flavoprotein wrbA (protein)
Unique Ligands	FMN, PEG

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4QNU	Download File View File

Crystal structure of CmoB bound with Cx-SAM in P21212

Kim, J., Toro, R., Bhosle, R., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

(2015) Nucleic Acids Res 43: 4602-4613

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli APEC O1
Macromolecule	tRNA (mo5U34)-methyltransferase (protein)
Unique Ligands	GEK, PO4

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4QNV	Download File View File

Crystal structure of Cx-SAM bound CmoB from E. coli in P6122

Kim, J., Toro, R., Bhosle, R., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

(2015) Nucleic Acids Res 43: 4602-4613

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Escherichia coli APEC O1
Macromolecule	tRNA (mo5U34)-methyltransferase (protein)
Unique Ligands	GEK, PO4

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6MGC	Download File View File

Escherichia coli KpsC, N-terminal domain

Doyle, L., Mallette, E., Kimber, M.S.

(2019) Nat Chem Biol 15: 632-640

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli APEC O1
Macromolecule	Capsule polysaccharide export protein KpsC (protein)
Unique Ligands	C5P, CL, SO4

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AF_AFA1A756F1	Download File

Computed structure model of Homoserine kinase

AlphaFold DB	AF-A1A756-F1
pLDDT (global)	97.23
Organisms	Escherichia coli APEC O1
Macromolecule	Homoserine kinase (protein)

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AF_AFA1A759F1	Download File

Computed structure model of UPF0246 protein YaaA

AlphaFold DB	AF-A1A759-F1
pLDDT (global)	97.58
Organisms	Escherichia coli APEC O1
Macromolecule	UPF0246 protein YaaA (protein)

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AF_AFA1A765F1	Download File

Computed structure model of UPF0412 protein YaaI

AlphaFold DB	AF-A1A765-F1
pLDDT (global)	84.3
Organisms	Escherichia coli APEC O1
Macromolecule	UPF0412 protein YaaI (protein)

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AF_AFA1A766F1	Download File

Computed structure model of Chaperone protein DnaK

AlphaFold DB	AF-A1A766-F1
pLDDT (global)	92.27
Organisms	Escherichia coli APEC O1
Macromolecule	Chaperone protein DnaK (protein)

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AF_AFA1A771F1	Download File

Computed structure model of Na(+)/H(+) antiporter NhaA

AlphaFold DB	AF-A1A771-F1
pLDDT (global)	89
Organisms	Escherichia coli APEC O1
Macromolecule	Na(+)/H(+) antiporter NhaA (protein)

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AF_AFA1A774F1	Download File

Computed structure model of Isoleucine--tRNA ligase

AlphaFold DB	AF-A1A774-F1
pLDDT (global)	93.99
Organisms	Escherichia coli APEC O1
Macromolecule	Isoleucine--tRNA ligase (protein)

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AF_AFA1A775F1	Download File

Computed structure model of Lipoprotein signal peptidase

AlphaFold DB	AF-A1A775-F1
pLDDT (global)	93.39
Organisms	Escherichia coli APEC O1
Macromolecule	Lipoprotein signal peptidase (protein)

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AF_AFA1A777F1	Download File

Computed structure model of 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

AlphaFold DB	AF-A1A777-F1
pLDDT (global)	97.05
Organisms	Escherichia coli APEC O1
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)

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AF_AFA1A778F1	Download File

Computed structure model of Non-specific ribonucleoside hydrolase RihC

AlphaFold DB	AF-A1A778-F1
pLDDT (global)	96.5
Organisms	Escherichia coli APEC O1
Macromolecule	Non-specific ribonucleoside hydrolase RihC (protein)

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AF_AFA1A780F1	Download File

Computed structure model of 4-hydroxy-tetrahydrodipicolinate reductase

AlphaFold DB	AF-A1A780-F1
pLDDT (global)	95.99
Organisms	Escherichia coli APEC O1
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)

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AF_AFA1A785F1	Download File

Computed structure model of Carnitine operon protein CaiE

AlphaFold DB	AF-A1A785-F1
pLDDT (global)	97.22
Organisms	Escherichia coli APEC O1
Macromolecule	Carnitine operon protein CaiE (protein)

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AF_AFA1A787F1	Download File

Computed structure model of Crotonobetaine/carnitine--CoA ligase

AlphaFold DB	AF-A1A787-F1
pLDDT (global)	92.48
Organisms	Escherichia coli APEC O1
Macromolecule	Crotonobetaine/carnitine--CoA ligase (protein)

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AF_AFA1A788F1	Download File

Computed structure model of L-carnitine CoA-transferase

AlphaFold DB	AF-A1A788-F1
pLDDT (global)	98.25
Organisms	Escherichia coli APEC O1
Macromolecule	L-carnitine CoA-transferase (protein)

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AF_AFA1A789F1	Download File

Computed structure model of Crotonobetainyl-CoA reductase

AlphaFold DB	AF-A1A789-F1
pLDDT (global)	96.64
Organisms	Escherichia coli APEC O1
Macromolecule	Crotonobetainyl-CoA reductase (protein)

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AF_AFA1A790F1	Download File

Computed structure model of L-carnitine/gamma-butyrobetaine antiporter

AlphaFold DB	AF-A1A790-F1
pLDDT (global)	94.5
Organisms	Escherichia coli APEC O1
Macromolecule	L-carnitine/gamma-butyrobetaine antiporter (protein)

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AF_AFA1A792F1	Download File

Computed structure model of Protein FixB

AlphaFold DB	AF-A1A792-F1
pLDDT (global)	94.21
Organisms	Escherichia coli APEC O1
Macromolecule	Protein FixB (protein)

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AF_AFA1A795F1	Download File

Computed structure model of Glutathione-regulated potassium-efflux system ancillary protein KefF

AlphaFold DB	AF-A1A795-F1
pLDDT (global)	98.18
Organisms	Escherichia coli APEC O1
Macromolecule	Glutathione-regulated potassium-efflux system ancillary protein KefF (protein)