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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Psychromonas ingrahamii 37"

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Search Summary

This query matches 118 Structures.

Refinements

Structure Determination Methodology

experimental (118)

Scientific Name of Source Organism

	Xenopus laevis (118)
	Thermochaetoides thermophila DSM 1495 (1)

Taxonomy

Eukaryota (118)

Experimental Method

	X-RAY DIFFRACTION (106)
	SOLUTION NMR (12)

Polymer Entity Type

Protein (118)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (13)
	2.0 - 2.5 (20)
	2.5 - 3.0 (40)
	3.0 - 3.5 (22)
	3.5 - 4.0 (5)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (106)
	2015 - 2019 (1)

Enzyme Classification Name

	Transferases (11)
	Ligases (10)
	Hydrolases (1)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (77)
	Asymmetric (51)
	Dihedral (2)

SCOP Classification

	All alpha proteins (25)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 118 Structures

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2KDE: Entity 2	Download File View File

NMR structure of major S5a (196-306):K48 linked diubiquitin species

Zhang, N., Wang, Q., Ehlinger, A., Randles, L., Lary, J.W., Kang, Y., Haririnia, A., Cole, J.L., Fushman, D., Walters, K.J.

(2009) Mol Cell 35: 280-290

Released	2009-09-01
Method	SOLUTION NMR
Chain IDs	B, C
Organism	Xenopus laevis
Macromolecule	Ubiquitin

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2KDU: Entity 1	Download File View File

Structural basis of the Munc13-1/Ca2+-Calmodulin interaction: A novel 1-26 calmodulin binding motif with a bipartite binding mode

Rodriguez-Castaneda, F.A., Maestre-Martinez, M., Coudevylle, N., Dimova, K., Jahn, O., Junge, H., Becker, S., Brose, N., Carlomagno, T., Griesinger, C.

(2010) EMBO J 29: 680-691

Released	2009-12-15
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Calmodulin

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2KN0: Entity 1	Download File View File

Solution NMR Structure of xenopus Fn14

Pellegrini, M., Willen, L., Perroud, M., Krushinskie, D., Strauch, K., Cuervo, H., Sun, Y., Day, E.S., Schneider, P., Zheng, T.S.

(2013) FEBS J 280: 1818-1829

Released	2011-06-29
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Fn14

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2KR2: Entity 1	Download File View File

Xenopus laevis malectin complexed with maltose (Glcalpha1-4Glc)

Schallus, T., Feher, K., Muhle-Goll, C.

(2010) Glycobiology 20: 1010-1020

Released	2010-07-14
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Malectin-A

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2L11: Entity 2	Download File View File

Solution NMR structure of the Cbx3 in complex with H3K9me3 peptide

Kaustov, L., Lemak, A., Fares, C., Gutmanas, A., Quang, H., Loppnau, P., Min, J., Edwards, A., Arrowsmith, C., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2010-08-04
Method	SOLUTION NMR
Chain ID	B
Organism	Xenopus laevis
Macromolecule	Histone H3

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2L12: Entity 2	Download File View File

Solution NMR structure of the chromobox protein 7 with H3K9me3

Kaustov, L., Lemak, A., Gutmanas, A., Fares, C., Quang, H., Loppnau, P., Min, J., Edwards, A., Arrowsmith, C., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2010-08-04
Method	SOLUTION NMR
Chain ID	B
Organism	Xenopus laevis
Macromolecule	Histone H3

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2L1B: Entity 2	Download File View File

Solution NMR structure of the chromobox protein Cbx7 with H3K27me3

Kaustov, L., Lemak, A., Fares, C., Gutmanas, A., Muhandiram, R., Quang, H., Loppnau, P., Min, J., Edwards, A., Arrowsmith, C., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2010-08-25
Method	SOLUTION NMR
Chain ID	B
Organism	Xenopus laevis
Macromolecule	Histone H3

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2LLO: Entity 1	Download File View File

Solution NMR-derived structure of calmodulin N-lobe bound with ER alpha peptide

Zhang, Y.

(2012) J Biological Chem 287: 9336-9344

Released	2012-02-01
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Calmodulin

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2LLQ: Entity 1	Download File View File

Solution nmr-derived structure of calmodulin c-lobe bound with er alpha peptide

Zhang, Y.

(2012) J Biological Chem 287: 9336-9344

Released	2012-02-01
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Calmodulin

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2LSA: Entity 1	Download File View File

Magainin

Vermeer, L.S., Mason, J.A.

To be published

Released	2013-04-03
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Magainin-2

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2MES: Entity 1	Download File View File

Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide

Zhang, Y., Ames, J.B.

(2014) EMBO J 33: 1341-1353

Released	2014-12-24
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Calmodulin

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2MPJ: Entity 1	Download File View File

NMR structure of Xenopus RecQ4 zinc knuckle

Zucchelli, C., Marino, F., Mojumdar, A., Onesti, S., Musco, G.

(2016) Sci Rep 6: 21501-21501

Released	2015-08-05
Method	SOLUTION NMR
Chain ID	A
Organism	Xenopus laevis
Macromolecule	RECQL4-helicase-like protein

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3C1B: Entity 1	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, E
Organism	Xenopus laevis
Macromolecule	Histone H3-like

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3C1B: Entity 2	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	B, F
Organism	Xenopus laevis
Macromolecule	Histone H4

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3C1B: Entity 3	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	G, C
Organism	Xenopus laevis
Macromolecule	Histone H2A type 1

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3C1C: Entity 1	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 3.15 Å
Chain IDs	A, E
Organism	Xenopus laevis
Macromolecule	Histone H3-like

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3C1C: Entity 2	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 3.15 Å
Chain IDs	B, F
Organism	Xenopus laevis
Macromolecule	Histone H4

Explore in 3D

3C1C: Entity 3	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 3.15 Å
Chain IDs	C, G
Organism	Xenopus laevis
Macromolecule	Histone H2A type 1

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3EBE: Entity 1	Download File View File

Crystal structure of xenopus laevis replication initiation factor MCM10 internal domain

Warren, E.M., Eichman, B.F.

(2008) Structure 16: 1892-1901

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	C, A, B
Organism	Xenopus laevis
Macromolecule	Protein MCM10 homolog

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3FY5: Entity 1	Download File View File

Dishevelled PDZ domain homodimer

Earnest, T., Friedland, N., Hung, L.-W., Moon, R.

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Xenopus laevis
Macromolecule	Segment polarity protein dishevelled homolog DVL-2

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3H15: Entity 1	Download File View File

Crystal structure of replication initiation factor MCM10-ID bound to ssDNA

Warren, E.M., Eichman, B.F.

(2009) J Biological Chem 284: 24662-24672

Released	2009-07-14
Method	X-RAY DIFFRACTION 2.72 Å
Chain ID	A
Organism	Xenopus laevis
Macromolecule	Protein MCM10 homolog

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3KWQ: Entity 1	Download File View File

Structural characterization of H3K56Q nucleosomes and nucleosomal arrays

Lilyestrom, W.G., Clark, N.

Biochim Biophys Acta 1799: 480-486

Released	2010-05-12
Method	X-RAY DIFFRACTION 3.5 Å
Chain IDs	A, E
Organism	Xenopus laevis
Macromolecule	Histone H3.2

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3KWQ: Entity 2	Download File View File

Structural characterization of H3K56Q nucleosomes and nucleosomal arrays

Lilyestrom, W.G., Clark, N.

Biochim Biophys Acta 1799: 480-486

Released	2010-05-12
Method	X-RAY DIFFRACTION 3.5 Å
Chain IDs	B, F
Organism	Xenopus laevis
Macromolecule	Histone H4

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3KWQ: Entity 3	Download File View File

Structural characterization of H3K56Q nucleosomes and nucleosomal arrays

Lilyestrom, W.G., Clark, N.

Biochim Biophys Acta 1799: 480-486

Released	2010-05-12
Method	X-RAY DIFFRACTION 3.5 Å
Chain IDs	C, G
Organism	Xenopus laevis
Macromolecule	Histone H2A

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3KWQ: Entity 4	Download File View File

Structural characterization of H3K56Q nucleosomes and nucleosomal arrays

Lilyestrom, W.G., Clark, N.

Biochim Biophys Acta 1799: 480-486

Released	2010-05-12
Method	X-RAY DIFFRACTION 3.5 Å
Chain IDs	D, H
Organism	Xenopus laevis
Macromolecule	Histone H2B 1.1

1 to 25 of 118 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification