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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Archer, M."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Allochromatium vinosum DSM 180 (8)
	Sus scrofa (5)
	Megalodesulfovibrio gigas (4)
	Archaeoglobus fulgidus (3)
	Nitratidesulfovibrio vulgaris str. Hildenborough (3)
	Phytophthora cinnamomi (3)
	Acidianus ambivalens (2)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Escherichia coli K-12 (2)
	Mycobacteroides abscessus (2)

More...

Taxonomy

	Bacteria (30)
	Eukaryota (11)
	Archaea (5)

Experimental Method

	X-RAY DIFFRACTION (42)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (15)
	2.0 - 2.5 (6)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (2)
	2005 - 2009 (11)
	2010 - 2014 (5)
	2015 - 2019 (14)
	2020 - 2024 (9)

Enzyme Classification Name

	Oxidoreductases (16)
	Transferases (8)
	Hydrolases (6)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (4)
	OPM (3)
	mpstruc (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (27)
	Cyclic (20)

SCOP Classification

	All alpha proteins (7)
	Alpha and beta proteins (a+b) (2)
	Small proteins (5)
	All beta proteins (6)
	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 25 of 46 Structures

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1CFW \| pdb_00001cfw	Download File View File

GA-SUBSTITUTED DESULFOREDOXIN

Archer, M., Carvalho, A.L., Teixeira, S., Moura, I., Moura, J.J.G., Rusnak, F., Romao, M.J.

(1999) Protein Sci 8: 1536-1545

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	PROTEIN (DESULFOREDOXIN) (protein)
Unique Ligands	GA, SO4

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1DCD \| pdb_00001dcd	Download File View File

DESULFOREDOXIN COMPLEXED WITH CD2+

Archer, M., Carvalho, A.L., Teixeira, S., Romao, M.J.

(1999) Protein Sci 8: 1536-1545

Released	1999-07-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	PROTEIN (DESULFOREDOXIN) (protein)
Unique Ligands	CD

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1DHG \| pdb_00001dhg	Download File View File

HG-SUBSTITUTED DESULFOREDOXIN

Archer, M., Carvalho, A.L., Teixeira, S., Moura, I., Moura, J.J.G., Rusnak, F., Romao, M.J.

(1999) Protein Sci 8: 1536-1545

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	PROTEIN (DESULFOREDOXIN) (protein)
Unique Ligands	HG

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1DXG \| pdb_00001dxg	Download File View File

CRYSTAL STRUCTURE OF DESULFOREDOXIN FROM DESULFOVIBRIO GIGAS AT 1.8 A RESOLUTION

Archer, M., Huber, R., Romao, M.J.

(1995) J Mol Biology 251: 690-702

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	DESULFOREDOXIN (protein)
Unique Ligands	FE

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1H1D \| pdb_00001h1d	Download File View File

Catechol O-Methyltransferase

Archer, M., Rodrigues, M.L., Matias, P.M., Bonifacio, M.J., Learmonth, D.A., Soares-da-Silva, P., Carrondo, M.A.

(2002) Mol Pharmacol 62: 795

Released	2003-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	CATECHOL-O-METHYLTRANSFERASE (protein)
Unique Ligands	BIA, MG, SAM

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1JAF \| pdb_00001jaf	Download File View File

CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION

Archer, M., Banci, L., Dikaya, E., Romao, M.J.

(1997) J Biol Inorg Chem 2: 611

Released	1998-01-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rubrivivax gelatinosus
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEM

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1LJP \| pdb_00001ljp	Download File View File

Crystal Structure of beta-Cinnamomin Elicitin

Rodrigues, M.L., Archer, M., Martel, P., Jacquet, A., Cravador, A., Carrondo, M.A.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1314-1321

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Phytophthora cinnamomi
Macromolecule	Beta-elicitin cinnamomin (protein)

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2A8F \| pdb_00002a8f	Download File View File

beta-cinnamomin after sterol removal

Rodrigues, M.L., Archer, M., Martel, P., Miranda, S., Thomaz, M., Enguita, F.J., Baptista, R.P., Melo, E.P., Sousa, N., Cravador, A., Carrondo, M.A.

(2006) Biochim Biophys Acta 1764: 110-121

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Phytophthora cinnamomi
Macromolecule	Beta-elicitin cinnamomin (protein)

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2AIB \| pdb_00002aib	Download File View File

beta-cinnamomin in complex with ergosterol

Rodrigues, M.L., Archer, M., Martel, P., Miranda, S., Thomaz, M., Enguita, F.J., Baptista, R.P., Melo, E.P., Sousa, N., Cravador, A., Carrondo, M.A.

(2006) Biochim Biophys Acta 1764: 110-121

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Phytophthora cinnamomi
Macromolecule	Beta-elicitin cinnamomin (protein)
Unique Ligands	ERG, GOL, MES

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2CL5 \| pdb_00002cl5	Download File View File

Catechol-O-methyltransferase in complex with an inhibitor

Palma, P.N., Rodrigues, M.L., Archer, M., Bonifacio, M.J., Loureiro, A.I., Learmonth, D.A., Carrondo, M.A., Soares-Da-Silva, P.

(2006) Mol Pharmacol 70: 143

Released	2006-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rattus norvegicus
Macromolecule	CATECHOL O-METHYLTRANSFERASE (protein)
Unique Ligands	BIE, BU3, MES, MG, SAM

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2J7A \| pdb_00002j7a	Download File View File

Crystal structure of cytochrome c nitrite reductase NrfHA complex from Desulfovibrio vulgaris

Rodrigues, M.L., Oliveira, T.F., Pereira, I.A.C., Archer, M.

(2006) EMBO J 25: 5951

Released	2006-12-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	CYTOCHROME C NITRITE REDUCTASE NRFA (protein) CYTOCHROME C QUINOL DEHYDROGENASE NRFH (protein)
Unique Ligands	ACT, CA, HEC, LMT

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2V35 \| pdb_00002v35	Download File View File

Porcine Pancreatic Elastase in complex with inhibitor JM54

Oliveira, T.F., Mulchande, J., Martins, L., Moreira, R., Iley, J., Archer, M.

(2007) Org Biomol Chem 5: 2617

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Sus scrofa
Macromolecule	ELASTASE-1 (protein)
Unique Ligands	GOL, J54, NA, SO4

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2V4J \| pdb_00002v4j	Download File View File

THE CRYSTAL STRUCTURE OF Desulfovibrio vulgaris DISSIMILATORY SULFITE REDUCTASE BOUND TO DsrC PROVIDES NOVEL INSIGHTS INTO THE MECHANISM OF SULFATE RESPIRATION

Oliveira, T.F., Vonrhein, C., Matias, P.M., Venceslau, S.S., Pereira, I.A.C., Archer, M.

(2008) J Biological Chem 283: 34141

Released	2008-12-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT ALPHA (protein) SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT BETA (protein) SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT GAMMA (protein)
Unique Ligands	SF4, SH0, SO3, SRM

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2VR0 \| pdb_00002vr0	Download File View File

Crystal structure of cytochrome c nitrite reductase NrfHA complex bound to the HQNO inhibitor

Rodrigues, M.L., Archer, M.

(2008) J Mol Biology 381: 341

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA (protein) NAPC/NIRT CYTOCHROME C FAMILY PROTEIN (protein)
Unique Ligands	CA, HEC, HQO

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2XME \| pdb_00002xme	Download File View File

The X-ray structure of CTP:inositol-1-phosphate cytidylyltransferase from Archaeoglobus fulgidus

Brito, J.A., Borges, N., Vonrhein, C., Santos, H., Archer, M.

(2011) J Bacteriol 193: 2177

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	CTP-INOSITOL-1-PHOSPHATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	GOL

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2XMH \| pdb_00002xmh	Download File View File

The X-ray structure of CTP:inositol-1-phosphate cytidylyltransferase from Archaeoglobus fulgidus

Brito, J.A., Borges, N., Vonrhein, C., Santos, H., Archer, M.

(2011) J Bacteriol 193: 2177-2185

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	CTP-INOSITOL-1-PHOSPHATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	FLC

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2XSJ \| pdb_00002xsj	Download File View File

Structure of desulforubidin from Desulfomicrobium norvegicum

Oliveira, T.F., Khan, A.R., Pereira, I.A.C., Archer, M.

(2011) Front Microbiol 2: 71

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Desulfomicrobium norvegicum
Macromolecule	SULFITE REDUCTASE ALPHA SUBUNIT (protein) SULFITE REDUCTASE BETA SUBUNIT (protein) SULFUR RELAY PROTEIN, TUSE/DSRC/DSVC FAMILY (protein)
Unique Ligands	SF4, SO3, SRM

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3CP5 \| pdb_00003cp5	Download File View File

Cytochrome c from rhodothermus marinus

Stelter, M., Melo, A., Saraiva, L., Teixeira, M., Archer, M.

(2008) Biochemistry 47: 11953-11963

Released	2008-10-28
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Rhodothermus marinus
Macromolecule	Cytochrome c (protein)
Unique Ligands	HEC, SO4

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3H31 \| pdb_00003h31	Download File View File

Structure of Rhodothermus marinus HiPIP at 1.0 A resolution

Stelter, M., Melo, A.M.P., Saraiva, L., Teixeira, M., Archer, M.

(2010) J Biol Inorg Chem 15: 303-313

Released	2009-12-15
Method	X-RAY DIFFRACTION 1 Å
Organisms	Rhodothermus marinus
Macromolecule	High potential iron-sulfur protein (protein)
Unique Ligands	SF4

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3H8I \| pdb_00003h8i	Download File View File

The first X-ray structure of a sulfide:quinone oxidoreductase: Insights into sulfide oxidation mechanism

Brito, J.A., Sousa, F.L., Stelter, M., Bandeiras, T.M., Vonrhein, C., Teixeira, M., Pereira, M.M., Archer, M.

(2009) Biochemistry 48: 5613-5622

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Acidianus ambivalens
Macromolecule	NADH oxidase (protein)
Unique Ligands	FAD, PO4, S3H

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3H8L \| pdb_00003h8l	Download File View File

The first X-ray structure of a sulfide:quinone oxidoreductase: insights into sulfide oxidation mechanism

Brito, J.A., Sousa, F.L., Stelter, M., Bandeiras, T.M., Vonrhein, C., Teixeira, M., Pereira, M.M., Archer, M.

(2009) Biochemistry 48: 5613-5622

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Acidianus ambivalens
Macromolecule	NADH oxidase (protein)
Unique Ligands	FAD, PO4, S3H

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4BND \| pdb_00004bnd	Download File View File

Structure of an atypical alpha-phosphoglucomutase similar to eukaryotic phosphomannomutases

Nogly, P., Matias, P.M., De Rosa, M., Castro, R., Santos, H., Neves, A.R., Archer, M.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2008

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	ALPHA-PHOSPHOGLUCOMUTASE (protein)
Unique Ligands	GOL, SO4

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4MND \| pdb_00004mnd	Download File View File

Crystal structure of Archaeoglobus fulgidus IPCT-DIPPS bifunctional membrane protein

Nogly, P., Gushchin, I., Remeeva, A., Esteves, A.M., Ishchenko, A., Ma, P., Grudinin, S., Borges, N., Round, E., Moraes, I., Borshchevskiy, V., Santos, H., Gordeliy, V., Archer, M.

(2014) Nat Commun 5: 4169-4169

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	CTP L-myo-inositol-1-phosphate cytidylyltransferase/CDP-L-myo-inositol myo-inositolphosphotransferase (protein)
Unique Ligands	LFA, MG

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4P8I \| pdb_00004p8i	Download File View File

Tgl - a bacterial spore coat transglutaminase

Brito, J.A., Placido, D., Fernandes, C., Lousa, D., Isidro, A., Soares, C.M., Pohl, J., Carrondo, M.A., Henriques, A.O., Archer, M.

(2015) Biochemistry 54: 5723-5734

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Protein-glutamine gamma-glutamyltransferase (protein)
Unique Ligands	EDO, GOL, PEG, PGE

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4PA5 \| pdb_00004pa5	Download File View File

Tgl - a bacterial spore coat transglutaminase - cystamine complex

Brito, J.A., Placido, D., Fernandes, C.G., Lousa, D., Isidro, A., Soares, C.M., Pohl, J., Carrondo, M.A., Henriques, A.O., Archer, M.

(2015) Biochemistry 54: 5723-5734

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Protein-glutamine gamma-glutamyltransferase (protein)
Unique Ligands	DHL, EDO, FLC, GOL, PG4, PGE, SO4, ZN

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CFW | pdb_00001cfw

1DCD | pdb_00001dcd

1DHG | pdb_00001dhg

1DXG | pdb_00001dxg

1H1D | pdb_00001h1d

1JAF | pdb_00001jaf

1LJP | pdb_00001ljp

2A8F | pdb_00002a8f

2AIB | pdb_00002aib

2CL5 | pdb_00002cl5

2J7A | pdb_00002j7a

2V35 | pdb_00002v35

2V4J | pdb_00002v4j

2VR0 | pdb_00002vr0

2XME | pdb_00002xme

2XMH | pdb_00002xmh

2XSJ | pdb_00002xsj

3CP5 | pdb_00003cp5

3H31 | pdb_00003h31

3H8I | pdb_00003h8i

3H8L | pdb_00003h8l

4BND | pdb_00004bnd

4MND | pdb_00004mnd

4P8I | pdb_00004p8i

4PA5 | pdb_00004pa5