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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bale, S."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (17)
	Mus musculus (3)
	Thermotoga maritima (3)
	Marburg virus - Musoke, Kenya, 1980 (2)
	Cupriavidus metallidurans (1)
	Ebola virus - Zaire (1995) (1)
	Halalkalibacterium halodurans C-125 (1)
	Macaca mulatta (1)
	Neurospora crassa (1)
	Reston ebolavirus - Reston (1989) (1)

More...

Taxonomy

	Eukaryota (23)
	Riboviria (6)
	Bacteria (5)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

	Protein (31)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (16)
	2.0 - 2.5 (8)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (18)
	2010 - 2014 (13)

Enzyme Classification Name

	Lyases (20)
	Transferases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (27)
	Cyclic (5)
	Dihedral (3)
	Helical (1)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (1)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 31 Structures

Page 1 of 2

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2NOX \| pdb_00002nox	Download File View File

Crystal structure of tryptophan 2,3-dioxygenase from Ralstonia metallidurans

Zhang, Y., Kang, S.A., Mukherjee, T., Bale, S., Crane, B.R., Begley, T.P., Ealick, S.E.

(2007) Biochemistry 46: 145-155

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Cupriavidus metallidurans
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM

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2Y6S \| pdb_00002y6s	Download File View File

Structure of an Ebolavirus-protective antibody in complex with its mucin-domain linear epitope

Olal, D.O., Kuehne, A., Lee, J.E., Bale, S., Dye, J.M., Saphire, E.O.

(2012) J Virol 86: 2809

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Ebola virus - Zaire (1995) Mus musculus
Macromolecule	ENVELOPE GLYCOPROTEIN (protein) HEAVY CHAIN (protein) LIGHT CHAIN (protein)

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3DZ2 \| pdb_00003dz2	Download File View File

Human AdoMetDC with 5'-[(3-aminopropyl)methylamino]-5'deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	A8M, PUT

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3DZ3 \| pdb_00003dz3	Download File View File

Human AdoMetDC F223A mutant with covalently bound S-Adenosylmethionine methyl ester

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, SMM

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3DZ4 \| pdb_00003dz4	Download File View File

Human AdoMetDC with 5'-[(2-carboxamidoethyl)methylamino]-5'-deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	C8M, PUT

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3DZ5 \| pdb_00003dz5	Download File View File

Human AdoMetDC with covalently bound 5'-[(2-aminooxyethyl)methylamino]-5'-deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	M8M, PUT

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3DZ6 \| pdb_00003dz6	Download File View File

Human AdoMetDC with 5'-[(4-aminooxybutyl)methylamino]-5'deoxy-8-ethyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	M8E, PUT

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3DZ7 \| pdb_00003dz7	Download File View File

Human AdoMetDC with 5'-[(carboxamidomethyl)methylamino]-5'-deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	O8M, PUT

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3EP3 \| pdb_00003ep3	Download File View File

Human AdoMetDC D174N mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

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3EP4 \| pdb_00003ep4	Download File View File

Human AdoMetDC E256Q mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

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3EP5 \| pdb_00003ep5	Download File View File

Human AdoMetDC E178Q mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS, URE

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3EP6 \| pdb_00003ep6	Download File View File

Human AdoMetDC D174N mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

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3EP7 \| pdb_00003ep7	Download File View File

Human AdoMetDC E256Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

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3EP8 \| pdb_00003ep8	Download File View File

Human AdoMetDC E178Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

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3EP9 \| pdb_00003ep9	Download File View File

Human AdoMetDC with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

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3EPA \| pdb_00003epa	Download File View File

Human AdoMetDC E178Q mutant complexed with putrescine

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, PYR, TRS

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3EPB \| pdb_00003epb	Download File View File

Human AdoMetDC E256Q mutant complexed with putrescine

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, PYR

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3FPZ \| pdb_00003fpz	Download File View File

Saccharomyces cerevisiae THI4p is a suicide thiamin thiazole synthase

Bale, S., Chatterjee, A., Dorrestein, P.C., Begley, T.P., Ealick, S.E.

(2011) Nature 478: 542-546

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Thiazole biosynthetic enzyme (protein)
Unique Ligands	AHZ, SO4

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3H0V \| pdb_00003h0v	Download File View File

Human AdoMetDC with 5'-Deoxy-5'-(dimethylsulfonio) adenosine

Bale, S., Brooks, W.H., Hanes, J.W., Mahesan, A.M., Guida, W.C., Ealick, S.E.

(2009) Biochemistry 48: 6423-6430

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase proenzyme (protein)
Unique Ligands	M2T, PUT, PYR

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3H0W \| pdb_00003h0w	Download File View File

Human AdoMetDC with 5'-Deoxy-5'-[(N-dimethyl)amino]-8-methyl-adenosine

Bale, S., Brooks, W.H., Hanes, J.W., Mahesan, A.M., Guida, W.C., Ealick, S.E.

(2009) Biochemistry 48: 6423-6430

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase proenzyme (protein)
Unique Ligands	N8M, PUT, PYR

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3IWB \| pdb_00003iwb	Download File View File

T. maritima AdoMetDC in processed form

Bale, S., Kavita, B., Ealick, S.E.

(2010) Acta Crystallogr D Biol Crystallogr 66: 181-189

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Thermotoga maritima
Macromolecule	S-adenosylmethionine decarboxylase (protein)

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3IWC \| pdb_00003iwc	Download File View File

T. maritima AdoMetDC complex with S-Adenosylmethionine methyl ester

Bale, S., Kavita, B., Ealick, S.E.

(2010) Acta Crystallogr D Biol Crystallogr 66: 181-189

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	S-adenosylmethionine decarboxylase (protein)
Unique Ligands	SMM

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3IWD \| pdb_00003iwd	Download File View File

T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine

Bale, S., Kavita, B., Ealick, S.E.

(2010) Acta Crystallogr D Biol Crystallogr 66: 181-189

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	S-adenosylmethionine decarboxylase (protein)
Unique Ligands	M2T

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3IX1 \| pdb_00003ix1	Download File View File

Periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein from Bacillus halodurans

Bale, S., Rajashankar, K.R., Perry, K., Begley, T.P., Ealick, S.E.

(2010) Biochemistry 49: 8929-8936

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein (protein)
Unique Ligands	NFM