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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Barondeau, D.P."

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Search Summary

This query matches 61 Structures.

Refinements

Structure Determination Methodology

experimental (61)

Scientific Name of Source Organism

	Aequorea victoria (34)
	Homo sapiens (10)
	Brevundimonas diminuta (7)
	Streptomyces coelicolor (4)
	Novosphingobium sp. KA1 (3)
	Alvinella pompejana (2)
	Deinococcus radiodurans (1)
	Escherichia coli K-12 (1)

Taxonomy

	Eukaryota (46)
	Bacteria (16)

Experimental Method

X-RAY DIFFRACTION (61)

Polymer Entity Type

Protein (61)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (23)
	1.5 - 2.0 (25)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (28)
	2010 - 2014 (18)
	2015 - 2019 (4)

Enzyme Classification Name

	Oxidoreductases (14)
	Hydrolases (7)
	Isomerases (3)
	Transferases (1)

Symmetry Type

	Asymmetric (44)
	Cyclic (15)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (42)
	All alpha proteins (4)
	Alpha and beta proteins (a/b) (8)
	Artifacts (8)
	Membrane and cell surface proteins and peptides (1)
	All beta proteins (2)

AllSelected

1 to 25 of 61 Structures

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1KYP \| pdb_00001kyp	Download File View File

Crystal Structure of an Apo Green Fluorescent Protein Zn Biosensor

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2002) J Am Chem Soc 124: 3522-3524

Released	2002-04-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)
Unique Ligands	MG

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1KYR \| pdb_00001kyr	Download File View File

Crystal Structure of a Cu-bound Green Fluorescent Protein Zn Biosensor

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2002) J Am Chem Soc 124: 3522-3524

Released	2002-04-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)
Unique Ligands	CU, MG

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1KYS \| pdb_00001kys	Download File View File

Crystal Structure of a Zn-bound Green Fluorescent Protein Biosensor

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2002) J Am Chem Soc 124: 3522-3524

Released	2002-04-10
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)
Unique Ligands	ZN

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1QXT \| pdb_00001qxt	Download File View File

Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (A)

Barondeau, D.P., Putnam, C.D., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

Proc Natl Acad Sci U S A 100: 12111-12116

Released	2003-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)

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1QY3 \| pdb_00001qy3	Download File View File

Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (B)

Barondeau, D.P., Putnam, C.D., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2003) Proc Natl Acad Sci U S A 100: 12111-12116

Released	2003-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)

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1QYF \| pdb_00001qyf	Download File View File

Crystal structure of matured green fluorescent protein R96A variant

Barondeau, D.P., Putnam, C.D., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2003) Proc Natl Acad Sci U S A 100: 12111-12116

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)
Unique Ligands	EDO, MG

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1QYO \| pdb_00001qyo	Download File View File

Anaerobic precylization intermediate crystal structure for S65G Y66G GFP variant

Barondeau, D.P., Putnam, C.D., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2003) Proc Natl Acad Sci U S A 100: 12111-12116

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)

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1QYQ \| pdb_00001qyq	Download File View File

Crystal Structure of the cyclized S65G Y66G GFP variant

Barondeau, D.P., Putnam, C.D., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2003) Proc Natl Acad Sci U S A 100: 12111-12116

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)

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1T6I \| pdb_00001t6i	Download File View File

Nickel Superoxide Dismutase (NiSOD) Apo Structure

Barondeau, D.P., Kassmann, C.J., Bruns, C.K., Tainer, J.A., Getzoff, E.D.

(2004) Biochemistry 43: 8038-8047

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Streptomyces coelicolor
Macromolecule	Superoxide dismutase [Ni] (protein)

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1T6Q \| pdb_00001t6q	Download File View File

Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure

Barondeau, D.P., Kassmann, C.J., Bruns, C.K., Tainer, J.A., Getzoff, E.D.

(2004) Biochemistry 43: 8038-8047

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptomyces coelicolor
Macromolecule	Superoxide dismutase [Ni] (protein)

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1T6U \| pdb_00001t6u	Download File View File

Nickel Superoxide Dismutase (NiSOD) Native 1.30 A Structure

Barondeau, D.P., Kassmann, C.J., Bruns, C.K., Tainer, J.A., Getzoff, E.D.

(2004) Biochemistry 43: 8038-8047

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces coelicolor
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	NI

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1YHG \| pdb_00001yhg	Download File View File

Uncyclized precursor structure of S65G Y66S V68G GFP variant

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 1960-1970

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)

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1YHH \| pdb_00001yhh	Download File View File

Uncyclized precursor structure of S65A Y66S G67A GFP variant

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 1960-1970

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)

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1YHI \| pdb_00001yhi	Download File View File

Uncyclized precursor structure of S65A Y66S R96A GFP variant

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 1960-1970

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)

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1YJ2 \| pdb_00001yj2	Download File View File

Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 1960-1970

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)
Unique Ligands	EDO, MG

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1YJF \| pdb_00001yjf	Download File View File

Cyclized post-translational product for S65A Y66S (GFPhal) green fluorescent protein variant

Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 1960-1970

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Aequorea victoria
Macromolecule	Green Fluorescent Protein (protein)
Unique Ligands	MG

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2AWJ \| pdb_00002awj	Download File View File

GFP R96M pre-cyclized intermediate in chromophore formation

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)
Unique Ligands	MG

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2AWK \| pdb_00002awk	Download File View File

GFP R96M mature chromophore

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2AWL \| pdb_00002awl	Download File View File

Mature R96K GFP mutant

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2AWM \| pdb_00002awm	Download File View File

GFP R96A chromophore maturation recovery mutant R96A Q183R

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2FWQ \| pdb_00002fwq	Download File View File

Reduced enolate chromophore intermediate for Y66H GFP variant

Barondeau, D.P., Tainer, J.A., Getzoff, E.D.

(2006) J Am Chem Soc 128: 3166-3168

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	MG

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2FZU \| pdb_00002fzu	Download File View File

Reduced enolate chromophore intermediate for GFP variant

Barondeau, D.P., Tainer, J.A., Getzoff, E.D.

(2006) J Am Chem Soc 128: 3166-3168

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	EDO, MG

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2G16 \| pdb_00002g16	Download File View File

Structure of S65A Y66S GFP variant after backbone fragmentation

Barondeau, D.P.

(2006) J Am Chem Soc 128: 4685-4693

Released	2006-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)

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2G2S \| pdb_00002g2s	Download File View File

Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis

Barondeau, D.P.

(2006) J Am Chem Soc 128: 4685-4693

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	MG

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2G3D \| pdb_00002g3d	Download File View File

Structure of S65G Y66A GFP variant after spontaneous peptide hydrolysis

Barondeau, D.P.

(2006) J Am Chem Soc 128: 4685-4693

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	MG

1 to 25 of 61 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KYP | pdb_00001kyp

1KYR | pdb_00001kyr

1KYS | pdb_00001kys

1QXT | pdb_00001qxt

1QY3 | pdb_00001qy3

1QYF | pdb_00001qyf

1QYO | pdb_00001qyo

1QYQ | pdb_00001qyq

1T6I | pdb_00001t6i

1T6Q | pdb_00001t6q

1T6U | pdb_00001t6u

1YHG | pdb_00001yhg

1YHH | pdb_00001yhh

1YHI | pdb_00001yhi

1YJ2 | pdb_00001yj2

1YJF | pdb_00001yjf

2AWJ | pdb_00002awj

2AWK | pdb_00002awk

2AWL | pdb_00002awl

2AWM | pdb_00002awm

2FWQ | pdb_00002fwq

2FZU | pdb_00002fzu

2G16 | pdb_00002g16

2G2S | pdb_00002g2s

2G3D | pdb_00002g3d