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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Croll, T.I."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (26)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Saccharomyces cerevisiae S288C (5)
	synthetic construct (3)
	Bos taurus (1)
	Cereibacter sphaeroides 2.4.1 (1)
	Mus musculus (1)
	Rhodospirillum rubrum ATCC 11170 (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (27)
	Riboviria (10)
	other sequences (3)
	Bacteria (2)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (14)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (33)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (9)
	3.0 - 3.5 (7)
	3.5 - 4.0 (8)
	4.0 - 4.5 (4)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (28)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (7)

Membrane Protein Annotation

	OPM (6)
	PDBTM (5)
	mpstruc (5)
	MemProtMD (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (6)
	Dihedral (1)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 33 Structures

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5JPM \| pdb_00005jpm	Download File View File

Structure of the complex of human complement C4 with MASP-2 rebuilt using iMDFF

Croll, T.I., Andersen, G.R.

(2016) Acta Crystallogr D Struct Biol 72: 1006-1016

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Homo sapiens
Macromolecule	Complement C4-A (protein) Mannan-binding lectin serine protease 2 (protein)
Unique branched monosaccharides	BMA, NAG

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5JPN \| pdb_00005jpn	Download File View File

Structure of human complement C4 rebuilt using iMDFF

Croll, T.I., Andersen, G.R.

(2016) Acta Crystallogr D Struct Biol 72: 1006-1016

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	Complement C4-A (protein)
Unique Ligands	A2G, PBM
Unique branched monosaccharides	BMA, MAN, NAG

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5JTW \| pdb_00005jtw	Download File View File

Crystal structure of complement C4b re-refined using iMDFF

Croll, T.I., Andersen, G.R.

(2016) Acta Crystallogr D Struct Biol 72: 1006-1016

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	Complement C4-A (protein)
Unique Ligands	NAG

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5KQV \| pdb_00005kqv	Download File View File

Insulin receptor ectodomain construct comprising domains L1,CR,L2, FnIII-1 and alphaCT peptide in complex with bovine insulin and FAB 83-14 (REVISED STRUCTURE)

Lawrence, M.C., Smith, B.J., Croll, T.I.

(2013) Nature 493: 241-245

Released	2017-07-19
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Bos taurus Homo sapiens Mus musculus
Macromolecule	Insulin (protein) Insulin receptor,Insulin receptor (protein) MONOCLONAL ANTIBODY FAB 83-14 - HEAVY CHAIN (protein) MONOCLONAL ANTIBODY FAB 83-14 - LIGHT CHAIN (protein)
Unique branched monosaccharides	FUC, NAG

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6EYC \| pdb_00006eyc	Download File View File

Re-refinement of the MCM2-7 double hexamer using ISOLDE

Croll, T.I.

(2018) Acta Crystallogr D Struct Biol 74: 519-530

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP, ZN

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6VJA \| pdb_00006vja	Download File View File

Structure of CD20 in complex with rituximab Fab

Rohou, A., Croll, T.I.

(2020) Science 367: 1224-1230

Released	2020-02-26
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	B-lymphocyte antigen CD20 (protein) Rituximab Fab heavy chain (protein) Rituximab Fab light chain (protein)
Unique Ligands	Y01

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6VWG \| pdb_00006vwg	Download File View File

Head region of the open conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.

Xu, Y., Kirk, N.S., Lawrence, M.C., Croll, T.I.

(2020) Structure 28: 786-798.e6

Released	2020-05-13
Method	ELECTRON MICROSCOPY 3.21 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Insulin-like growth factor II (protein) Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain (protein)
Unique Ligands	NAG

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6VWH \| pdb_00006vwh	Download File View File

Leg region of the open conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.

Xu, Y., Kirk, N.S., Lawrence, M.C., Croll, T.I.

(2020) Structure 28: 786-798.e6

Released	2020-05-13
Method	ELECTRON MICROSCOPY 4.26 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain (protein)

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6VWI \| pdb_00006vwi	Download File View File

Head region of the closed conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.

Xu, Y., Kirk, N.S., Lawrence, M.C., Croll, T.I.

(2020) Structure 28: 786-798.e6

Released	2020-05-13
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Insulin-like growth factor II (protein) Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain (protein)
Unique Ligands	NAG

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6VWJ \| pdb_00006vwj	Download File View File

Leg region of the closed conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II

Xu, Y., Kirk, N.S., Lawrence, M.C., Croll, T.I.

(2020) Structure 28: 786-798.e6

Released	2020-05-13
Method	ELECTRON MICROSCOPY 4.21 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain (protein)

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6ZHX \| pdb_00006zhx	Download File View File

Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: nucleosome class.

Bacic, L., Gaullier, G., Croll, T.I., Deindl, S.

(2020) Cell Rep 33: 108529-108529

Released	2020-12-23
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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7BEQ \| pdb_00007beq	Download File View File

MicroED structure of the MyD88 TIR domain higher-order assembly

Clabbers, M.T.B., Holmes, S., Muusse, T.W., Vajjhala, P., Thygesen, S.J., Malde, A.K., Hunter, D.J.B., Croll, T.I., Nanson, J.D., Rahaman, M.H., Aquila, A., Hunter, M.S., Liang, M., Yoon, C.H., Zhao, J., Zatsepin, N.A., Abbey, B., Sierecki, E., Gambin, Y., Darmanin, C., Kobe, B., Xu, H., Ve, T.

(2021) Nat Commun 12: 2578-2578

Released	2021-03-10
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Homo sapiens
Macromolecule	Myeloid differentiation primary response protein MyD88 (protein)

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7BER \| pdb_00007ber	Download File View File

SFX structure of the MyD88 TIR domain higher-order assembly (solved, rebuilt and refined using an identical protocol to the MicroED structure of the MyD88 TIR domain higher-order assembly)

(2021) Nat Commun 12: 2578-2578

Released	2021-03-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Myeloid differentiation primary response protein MyD88 (protein)

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7EZH \| pdb_00007ezh	Download File View File

Cryo-EM structure of an activated Cholecystokinin A receptor (CCKAR)-Gi complex

Liu, Q.F., Yang, D.H., Zhuang, Y.W., Croll, T.I., Cai, X.Q., Duan, J., Dai, A.T., Yin, W.C., Ye, C.Y., Zhou, F.L., Wu, B.L., Zhao, Q., Xu, H.E., Wang, M.W., Jiang, Y.

(2021) Nat Chem Biol 17: 1238-1244

Released	2021-08-25
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6

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7EZK \| pdb_00007ezk	Download File View File

Cryo-EM structure of an activated Cholecystokinin A receptor (CCKAR)-Gs complex

Liu, Q.F., Yang, D.H., Zhuang, Y.W., Croll, T.I., Cai, X.Q., Duan, J., Dai, A.T., Yin, W.C., Ye, C.Y., Zhou, F.L., Wu, B.L., Zhao, Q., Xu, H.E., Wang, M.W., Jiang, Y.

(2021) Nat Chem Biol 17: 1238-1244

Released	2021-08-25
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Chimera of Guanine nucleotide-binding protein G(i) subunit alpha-1 and Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Cholecystokinin receptor type A (protein) Cholecystokinin-8 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein)

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7EZM \| pdb_00007ezm	Download File View File

Cryo-EM structure of an activated Cholecystokinin A receptor (CCKAR)-Gq complex

Liu, Q.F., Yang, D.H., Zhuang, Y.W., Croll, T.I., Cai, X.Q., Duan, J., Dai, A.T., Yin, W.C., Ye, C.Y., Zhou, F.L., Wu, B.L., Zhao, Q., Xu, H.E., Wang, M.W., Jiang, Y.

(2021) Nat Chem Biol 17: 1238-1244

Released	2021-08-25
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6

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7L0N \| pdb_00007l0n	Download File View File

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

Snell, G., Czudnochowski, N., Dillen, J., Nix, J.C., Croll, T.I., Corti, D.

(2021) Cell 184: 1171-1187.e20

Released	2021-02-17
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 6
Unique Ligands	CL, NA, NAG, PG4, PG5, PGE, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7L6W \| pdb_00007l6w	Download File View File

SFX structure of the MyD88 TIR domain higher-order assembly

Clabbers, M.T.B., Holmes, S., Muusse, T.W., Vajjhala, P., Thygesen, S.J., Malde, A.K., Hunter, D.J.B., Croll, T.I., Flueckiger, L., Nanson, J.D., Rahaman, M.H., Aquila, A., Hunter, M.S., Liang, M., Yoon, C.H., Zhao, J., Zatsepin, N.A., Abbey, B., Sierecki, E., Gambin, Y., Stacey, K.J., Darmanin, C., Kobe, B., Xu, H., Ve, T.

(2021) Nat Commun 12: 2578-2578

Released	2021-03-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Myeloid differentiation primary response protein MyD88 (protein)

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7M7W \| pdb_00007m7w	Download File View File

Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape

Snell, G., Czudnochowski, N., Croll, T.I., Nix, J.C., Corti, D., Cameroni, E., Pinto, D., Beltramello, M.

(2021) Nature 597: 97-102

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Monoclonal antibody S2H97 Fab heavy chain (protein) Monoclonal antibody S2H97 Fab light chain (protein) Monoclonal antibody S2X259 Fab heavy chain (protein) Monoclonal antibody S2X259 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7NRB \| pdb_00007nrb	Download File View File

Re-refinement of MK3-inhibitor complex

Croll, T.I., Read, R.J.

(2021) Acta Crystallogr D Struct Biol 77: 438-446

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	MAP kinase-activated protein kinase 3 (protein)
Unique Ligands	P4O

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7NRY \| pdb_00007nry	Download File View File

Re-refinement of MAPKAP kinase-2/inhibitor complex 3fyj

Croll, T.I., Read, R.J.

(2021) Acta Crystallogr D Struct Biol 77: 438-446

Released	2022-02-09
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	MAP kinase-activated protein kinase 2 (protein)
Unique Ligands	B97, CL, MLA

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7OY8 \| pdb_00007oy8	Download File View File

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex

Qian, P., Croll, T.I., Castro, H.P., Moriarty, N.W., sader, K., Hunter, C.N.

(2021) Biochem J 478: 3253-3263

Released	2021-09-22
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Unique protein chains: 6
Unique Ligands	07D, BPH, CD4, CL, CRT, FE, LMT, PGW, PO4, RQ0, U10

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7PBW \| pdb_00007pbw	Download File View File

Cryo-EM structure of light harvesting complex 2 from Rba. sphaeroides.

Qian, P., Swainsbury, D.J.K., Croll, T.I., Castro-Hartmann, P., Sader, K., Divitini, G., Hunter, C.N.

(2021) Biochemistry 60: 3302-3314

Released	2021-11-24
Method	ELECTRON MICROSCOPY 2.1 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Light-harvesting protein B-800/850 alpha chain (protein) Light-harvesting protein B-800/850 beta chain (protein)
Unique Ligands	7OT, BCL, CA, LDA

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7R6W \| pdb_00007r6w	Download File View File

SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2X35 Fab and S309 Fab

Snell, G., Czudnochowski, N., Hernandez, P., Nix, J.C., Croll, T.I., Corti, D., Cameroni, E., Pinto, D., Beltramello, M.

(2021) Nature 597: 97-102

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy Chain of Fab domain of monoclonal antibody S2X35 (protein) Heavy Chain of Fab domain of monoclonal antibody S309 (protein) Light Chain of Fab domain of monoclonal antibody S2X35 (protein) Light Chain of Fab domain of monoclonal antibody S309 (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL, POL, SO4
Unique branched monosaccharides	NAG

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7R6X \| pdb_00007r6x	Download File View File

SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2E12 Fab, S309 Fab, and S304 Fab

Snell, G., Czudnochowski, N., Croll, T.I., Nix, J.C., Corti, D., Cameroni, E., Pinto, D., Beltramello, M.

(2021) Nature 597: 97-102

Released	2021-07-21
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 7
Unique Ligands	CL, NAG

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5JPM | pdb_00005jpm

5JPN | pdb_00005jpn

5JTW | pdb_00005jtw

5KQV | pdb_00005kqv

6EYC | pdb_00006eyc

6VJA | pdb_00006vja

6VWG | pdb_00006vwg

6VWH | pdb_00006vwh

6VWI | pdb_00006vwi

6VWJ | pdb_00006vwj

6ZHX | pdb_00006zhx

7BEQ | pdb_00007beq

7BER | pdb_00007ber

7EZH | pdb_00007ezh

7EZK | pdb_00007ezk

7EZM | pdb_00007ezm

7L0N | pdb_00007l0n

7L6W | pdb_00007l6w

7M7W | pdb_00007m7w

7NRB | pdb_00007nrb

7NRY | pdb_00007nry

7OY8 | pdb_00007oy8

7PBW | pdb_00007pbw

7R6W | pdb_00007r6w

7R6X | pdb_00007r6x