RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Dong, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 197 Structures.

Refinements

Structure Determination Methodology

experimental (197)

Scientific Name of Source Organism

	Arabidopsis thaliana (80)
	Homo sapiens (57)
	Bos taurus (7)
	Mus musculus (7)
	Gallus gallus (4)
	Streptomyces lividans (4)
	Zea mays (4)
	Escherichia coli (3)
	Methanothermobacter thermautotrophicus (3)
	Ralstonia sp. 5_2_56FAA (3)

More...

Taxonomy

	Eukaryota (166)
	Bacteria (21)
	Riboviria (11)
	Archaea (7)
	other sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (187)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (197)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (90)
	2.0 - 2.5 (50)
	2.5 - 3.0 (26)
	3.0 - 3.5 (10)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (26)
	2015 - 2019 (41)
	2020 - 2024 (103)
	2025 - 2029 (13)

Enzyme Classification Name

	Oxidoreductases (86)
	Transferases (29)
	Hydrolases (16)
	Ligases (7)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (79)
	Cyclic (108)
	Dihedral (13)
	Helical (2)

SCOP Classification

	All beta proteins (21)
	Alpha and beta proteins (a/b) (12)
	Alpha and beta proteins (a+b) (22)
	Artifacts (15)
	All alpha proteins (10)
	Small proteins (1)

AllSelected

1 to 25 of 197 Structures

Page 1 of 8

Sort by

Explore in 3D

1BVX \| pdb_00001bvx	Download File View File

THE 1.8 A STRUCTURE OF GEL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME

Dong, J., Boggon, T.J., Chayen, N.E., Raftery, J., Bi, R.C., Helliwell, J.R.

(1999) Acta Crystallogr D Biol Crystallogr 55: 745-752

Released	1998-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (LYSOZYME) (protein)

Explore in 3D

1BWH \| pdb_00001bwh	Download File View File

THE 1.8 A STRUCTURE OF GROUND CONTROL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME

Dong, J., Boggon, T.J., Chayen, N.E., Raftery, J., Bi, R.C.

(1999) Acta Crystallogr D Biol Crystallogr 55: 745-752

Released	1998-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (LYSOZYME) (protein)

Explore in 3D

1BWI \| pdb_00001bwi	Download File View File

THE 1.8 A STRUCTURE OF MICROBATCH OIL DROP GROWN TETRAGONAL HEN EGG WHITE LYSOZYME

Dong, J., Boggon, T.J., Chayen, N.E., Raftery, J., Bi, R.C.

(1999) Acta Crystallogr D Biol Crystallogr 55: 745-752

Released	1998-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (LYSOZYME) (protein)

Explore in 3D

1BWJ \| pdb_00001bwj	Download File View File

THE 1.8 A STRUCTURE OF MICROGRAVITY GROWN TETRAGONAL HEN EGG WHITE LYSOZYME

Dong, J., Boggon, T.J., Chayen, N.E., Raftery, J., Bi, R.C.

(1999) Acta Crystallogr D Biol Crystallogr 55: 745-752

Released	1998-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (LYSOZYME) (protein)

Explore in 3D

1OMX \| pdb_00001omx	Download File View File

Crystal structure of mouse alpha-1,4-N-acetylhexosaminyltransferase (EXTL2)

Pedersen, L.C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J.M., Pedersen, L.G., Sugahara, K., Negishi, M.

(2003) J Biological Chem 278: 14420-14428

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2 (protein)
Unique Ligands	EDO

Explore in 3D

1OMZ \| pdb_00001omz	Download File View File

crystal structure of mouse alpha-1,4-N-acetylhexosaminyltransferase (EXTL2) in complex with UDPGalNAc

Pedersen, L.C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J.M., Pedersen, L.G., Sugahara, K., Negishi, M.

(2003) J Biological Chem 278: 14420-14428

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2 (protein)
Unique Ligands	EDO, MN, UD2

Explore in 3D

1ON6 \| pdb_00001on6	Download File View File

Crystal structure of mouse alpha-1,4-N-acetylhexosaminotransferase (EXTL2) in complex with UDPGlcNAc

Pedersen, L.C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J.M., Pedersen, L.G., Sugahara, K., Negishi, M.

(2003) J Biological Chem 278: 14420-14428

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2 (protein)
Unique Ligands	EDO, MN, UD1

Explore in 3D

1ON8 \| pdb_00001on8	Download File View File

Crystal structure of mouse alpha-1,4-N-acetylhexosaminyltransferase (EXTL2) with UDP and GlcUAb(1-3)Galb(1-O)-naphthalenelmethanol an acceptor substrate analog

Pedersen, L.C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J.M., Pedersen, L.G., Sugahara, K., Negishi, M.

(2003) J Biological Chem 278: 14420-14428

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2 (protein)
Unique Ligands	EDO, MN, UDP
Unique branched monosaccharides	BDP, GAL

Explore in 3D

1XF7 \| pdb_00001xf7	Download File View File

High Resolution NMR Structure of the Wilms' Tumor Suppressor Protein (WT1) Finger 3

Lachenmann, M.J., Ladbury, J.E., Dong, J., Huang, K., Carey, P., Weiss, M.A.

(2004) Biochemistry 43: 13910-13925

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Wilms' Tumor Protein (protein)
Unique Ligands	ZN

Explore in 3D

2AEF \| pdb_00002aef	Download File View File

Crystal Structures of the MthK RCK Domain in Ca2+ bound form

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)
Unique Ligands	CA

Explore in 3D

2AEJ \| pdb_00002aej	Download File View File

Crystal Structures of the MthK RCK Domain in no Ca2+ bound form

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)

Explore in 3D

2AEM \| pdb_00002aem	Download File View File

Crystal Structures of the MthK RCK Domain

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)

Explore in 3D

3HGK \| pdb_00003hgk	Download File View File

crystal structure of effect protein AvrptoB complexed with kinase Pto

Dong, J., Fan, F., Gu, L., Chai, J.

(2009) Plant Cell 21: 1846-1859

Released	2009-06-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pseudomonas syringae pv. tomato Solanum pimpinellifolium
Macromolecule	Effector protein hopAB2 (protein) Protein kinase (protein)

Explore in 3D

3HGL \| pdb_00003hgl	Download File View File

crystal of AvrPtoB 121-205

Dong, J., Xiao, F., Fan, F., Gu, L., Cang, H., Martin, G.B., Chai, J.

(2009) Plant Cell 21: 1846-1859

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	Effector protein hopAB2 (protein)

Explore in 3D

3HTA \| pdb_00003hta	Download File View File

Crystal structure of multidrug binding protein EbrR complexed with imidazole

Dong, J., Ni, L., Schumacher, M., Brennan, R.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces lividans
Macromolecule	EbrA repressor (protein)
Unique Ligands	IMD

Explore in 3D

3HTH \| pdb_00003hth	Download File View File

Crystal structure of multidrug binding protein EbrR complexed with proflavin

Dong, J., Ni, L., Schumacher, M., Brennan, R.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces lividans
Macromolecule	EbrA repressor (protein)
Unique Ligands	NI, PRL

Explore in 3D

3HTI \| pdb_00003hti	Download File View File

Crystal structure of multidrug binding protein EbrR complexed with malachite green

Dong, J., Ni, L., Schumacher, M., Brennan, R.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptomyces lividans
Macromolecule	EbrA repressor (protein)
Unique Ligands	MGR

Explore in 3D

3HTJ \| pdb_00003htj	Download File View File

Crystal structure of multidrug binding protein EbrR complexed with ethidium

Dong, J., Ni, L., Schumacher, M., Brennan, R.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces lividans
Macromolecule	EbrA repressor (protein)
Unique Ligands	ET, NI

Explore in 3D

3K3Q \| pdb_00003k3q	Download File View File

Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain

Thompson, A.A., Dong, J., Marks, J.D., Stevens, R.C.

(2010) J Mol Biology 397: 1106-1118

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum A str. Hall Lama glama
Macromolecule	Botulinum neurotoxin type A (protein) llama Aa1 VHH domain (protein)
Unique Ligands	ZN