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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ficko-Blean, E."

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Clostridium perfringens (24)
	Zobellia galactanivorans (11)
	Clostridium perfringens ATCC 13124 (8)
	Halalkalibacterium halodurans C-125 (5)
	Streptococcus pneumoniae TIGR4 (3)
	Streptococcus pneumoniae SP3-BS71 (2)
	Bos taurus (1)
	Ruminiclostridium cellulolyticum (1)
	Streptococcus pneumoniae (1)

Taxonomy

	Bacteria (55)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (53)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (22)
	2.0 - 2.5 (22)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (23)
	2010 - 2014 (16)
	2015 - 2019 (11)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (36)

Symmetry Type

	Asymmetric (47)
	Cyclic (8)

SCOP Classification

	All beta proteins (5)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 55 Structures

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2C3G \| pdb_00002c3g	Download File View File

Structure of CBM26 from Bacillus halodurans amylase

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts Van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	CD

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2C3H \| pdb_00002c3h	Download File View File

Structure of CBM26 from Bacillus halodurans amylase in complex with maltose

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	GLC, SO4
Unique branched monosaccharides	GLC

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2C3V \| pdb_00002c3v	Download File View File

Structure of iodinated CBM25 from Bacillus halodurans amylase

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	IOD

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2C3W \| pdb_00002c3w	Download File View File

Structure of CBM25 from Bacillus halodurans amylase in complex with maltotetraose

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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2C3X \| pdb_00002c3x	Download File View File

Structure of iodinated CBM25 from Bacillus halodurans amylase in complex with maltotetraose

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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2J1A \| pdb_00002j1a	Download File View File

Structure of CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-08-22
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Clostridium perfringens ATCC 13124
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA, GAL

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2J1E \| pdb_00002j1e	Download File View File

High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-09-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridium perfringens ATCC 13124
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	GAL, NDG

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2J7M \| pdb_00002j7m	Download File View File

Characterization of a Family 32 CBM

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-10-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NDG

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2JH2 \| pdb_00002jh2	Download File View File

X-ray crystal structure of a cohesin-like module from Clostridium perfringens

Chitayat, S., Gregg, K., Adams, J.J., Ficko-Blean, E., Bayer, E.A., Boraston, A.B., Smith, S.P.

(2008) J Mol Biology 375: 20

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)

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2LS6 \| pdb_00002ls6	Download File View File

Solution NMR Structure of a Non-canonical galactose-binding CBM32 from Clostridium perfringens

Grondin, J.M., Chitayat, S., Ficko-Blean, E., Boraston, A.B., Smith, S.P.

(2014) J Mol Biology 426: 869-880

Released	2013-05-01
Method	SOLUTION NMR
Organisms	Clostridium perfringens ATCC 13124
Macromolecule	Hyaluronoglucosaminidase (protein)

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2LTJ \| pdb_00002ltj	Download File View File

Conformational analysis of StrH, the surface-attached exo- beta-D-N-acetylglucosaminidase from Streptococcus pneumoniae

Pluvinage, B., Chitayat, S., Ficko-Blean, E., Abbott, D., Kunjachen, J., Grondin, J., Spencer, H., Smith, S., Boraston, A.

(2013) J Mol Biology 425: 334-349

Released	2012-11-28
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae
Macromolecule	Beta-N-acetylhexosaminidase (protein)

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2V4V \| pdb_00002v4v	Download File View File

Crystal Structure of a Family 6 Carbohydrate-Binding Module from Clostridium cellulolyticum in complex with xylose

Abbott, D.W., Ficko-Blean, E., Lammerts van Bueren, A., Coutinho, P.M., Henrissat, B., Gilbert, H.J., Boraston, A.B.

(2009) Biochemistry 48: 10395

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	GH59 GALACTOSIDASE (protein)
Unique Ligands	NA, XYP

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2V5C \| pdb_00002v5c	Download File View File

Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA, CAC, NA

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2V5D \| pdb_00002v5d	Download File View File

Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA

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2V72 \| pdb_00002v72	Download File View File

The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose

Boraston, A.B., Ficko-Blean, E., Healey, M.

(2007) Biochemistry 46: 11352

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Clostridium perfringens
Macromolecule	EXO-ALPHA-SIALIDASE (protein)
Unique Ligands	CA, GAL

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2V73 \| pdb_00002v73	Download File View File

The structure of the family 40 CBM from C. perfringens NanJ in complex with a sialic acid containing molecule

Boraston, A.B., Ficko-Blean, E., Healey, M.

(2007) Biochemistry 46: 11352

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium perfringens
Macromolecule	PUTATIVE EXO-ALPHA-SIALIDASE (protein)
Unique Ligands	CA, SIA

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2VC9 \| pdb_00002vc9	Download File View File

Family 89 Glycoside Hydrolase from Clostridium perfringens in complex with 2-acetamido-1,2-dideoxynojirmycin

Ficko-Blean, E., Stubbs, K.A., Berg, O., Vocadlo, D.J., Boraston, A.B.

(2008) Proc Natl Acad Sci U S A 105: 6560

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Clostridium perfringens
Macromolecule	ALPHA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	CA, GOL, NOK

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2VCA \| pdb_00002vca	Download File View File

Family 89 glycoside hydrolase from Clostridium perfringens in complex with beta-N-acetyl-D-glucosamine

Ficko-Blean, E., Stubbs, K.A., Berg, O., Vocadlo, D.J., Boraston, A.B.

(2008) Proc Natl Acad Sci U S A 105: 6560

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Clostridium perfringens
Macromolecule	ALPHA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	CA, GOL, NAG, SO4

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2VCB \| pdb_00002vcb	Download File View File

Family 89 Glycoside Hydrolase from Clostridium perfringens in complex with PUGNAc

Ficko-Blean, E., Stubbs, K.A., Berg, O., Vocadlo, D.J., Boraston, A.B.

(2008) Proc Natl Acad Sci U S A 105: 6560

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium perfringens
Macromolecule	ALPHA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	CA, OAN

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2VCC \| pdb_00002vcc	Download File View File

Family 89 Glycoside Hydrolase from Clostridium perfringens

Ficko-Blean, E., Stubbs, K.A., Berg, O., Vocadlo, D.J., Boraston, A.B.

(2008) Proc Natl Acad Sci U S A 105: 6560

Released	2008-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium perfringens
Macromolecule	ALPHA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	CA, GOL, SO4

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2W1N \| pdb_00002w1n	Download File View File

cohesin and fibronectin type-III double module construct from the Clostridium perfringens glycoside hydrolase GH84C

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Czjzek, M., Smith, S.J., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	ACT

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2W1Q \| pdb_00002w1q	Download File View File

Unique ligand binding specificity for a family 32 Carbohydrate- Binding Module from the Mu toxin produced by Clostridium perfringens

Ficko-Blean, E., Boraston, A.B.

(2009) J Mol Biology 390: 208

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique Ligands	BTB, CA, NA

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2W1S \| pdb_00002w1s	Download File View File

Unique ligand binding specificity of a family 32 Carbohydrate-Binding Module from the Mu toxin produced by Clostridium perfringens

Ficko-Blean, E., Boraston, A.B.

(2009) J Mol Biology 390: 208

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique Ligands	BTB, CA, NA

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2W1U \| pdb_00002w1u	Download File View File

A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc

Ficko-Blean, E., Boraston, A.B.

(2009) J Mol Biology 390: 208

Released	2009-05-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	A2G, NAG, NGA

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2WDB \| pdb_00002wdb	Download File View File

A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,2) mannose

Ficko-Blean, E., Boraston, A.B.

(2009) J Mol Biology 390: 208

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN, NAG

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2C3G | pdb_00002c3g

2C3H | pdb_00002c3h

2C3V | pdb_00002c3v

2C3W | pdb_00002c3w

2C3X | pdb_00002c3x

2J1A | pdb_00002j1a

2J1E | pdb_00002j1e

2J7M | pdb_00002j7m

2JH2 | pdb_00002jh2

2LS6 | pdb_00002ls6

2LTJ | pdb_00002ltj

2V4V | pdb_00002v4v

2V5C | pdb_00002v5c

2V5D | pdb_00002v5d

2V72 | pdb_00002v72

2V73 | pdb_00002v73

2VC9 | pdb_00002vc9

2VCA | pdb_00002vca

2VCB | pdb_00002vcb

2VCC | pdb_00002vcc

2W1N | pdb_00002w1n

2W1Q | pdb_00002w1q

2W1S | pdb_00002w1s

2W1U | pdb_00002w1u

2WDB | pdb_00002wdb