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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Horikoshi, M."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (5)
	Homo sapiens (4)
	Actinobacillus (1)
	Methanocaldococcus jannaschii (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (9)
	Archaea (1)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (7)
	2010 - 2014 (1)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (2)
	Artifacts (3)
	All alpha proteins (1)
	All beta proteins (2)

AllSelected

1 to 11 of 11 Structures

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1IMJ \| pdb_00001imj	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN CCG1/TAFII250-INTERACTING FACTOR B (CIB)

Padmanabhan, B., Kuzuhara, T., Horikoshi, M.

(2004) J Biological Chem 279: 9615-9624

Released	2002-05-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CCG1-INTERACTING FACTOR B (protein)
Unique Ligands	SO4

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1IXV \| pdb_00001ixv	Download File View File

Crystal Structure Analysis of homolog of oncoprotein gankyrin, an interactor of Rb and CDK4/6

Padmanabhan, B., Adachi, N., Kataoka, K., Horikoshi, M.

(2004) J Biological Chem 279: 1546-1552

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Probable 26S proteasome regulatory subunit p28 (protein)

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1KP0 \| pdb_00001kp0	Download File View File

The Crystal Structure Analysis of Creatine Amidinohydrolase from Actinobacillus

Padmanabhan, B., Paehler, A., Horikoshi, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1322-1328

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Actinobacillus
Macromolecule	CREATINE AMIDINOHYDROLASE (protein)

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1WG0 \| pdb_00001wg0	Download File View File

Structural comparison of Nas6p protein structures in two different crystal forms

Nakamura, Y., Umehara, T., Tanaka, A., Horikoshi, M., Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Probable 26S proteasome regulatory subunit p28 (protein)

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1WG3 \| pdb_00001wg3	Download File View File

Structural analysis of yeast nucleosome-assembly factor CIA1p

Padmanabhan, B., Kataoka, K., Umehara, T., Adachi, N., Yokoyama, S., Horikoshi, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Biochem 138: 821-829

Released	2005-06-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Anti-silencing protein 1 (protein)

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2E50 \| pdb_00002e50	Download File View File

Crystal structure of SET/TAF-1beta/INHAT

Muto, S., Senda, M., Senda, T., Horikoshi, M.

(2007) Proc Natl Acad Sci U S A 104: 4285-4290

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Protein SET (protein)
Unique branched monosaccharides	GLC

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2IO5 \| pdb_00002io5	Download File View File

Crystal structure of the CIA- histone H3-H4 complex

Natsume, R., Akai, Y., Horikoshi, M., Senda, T.

(2007) Nature 446: 338-341

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	ASF1A protein (protein) Histone H3.1 (protein) Histone H4 (protein)

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2RNZ \| pdb_00002rnz	Download File View File

Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1

Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.

(2008) J Mol Biology 378: 987-1001

Released	2008-04-29
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Histone acetyltransferase ESA1 (protein)

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2RO0 \| pdb_00002ro0	Download File View File

Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1

Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.

(2008) J Mol Biology 378: 987-1001

Released	2008-04-29
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Histone acetyltransferase ESA1 (protein)

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2Z8U \| pdb_00002z8u	Download File View File

Methanococcus jannaschii TBP

Adachi, N., Senda, T., Horikoshi, M.

(2008) Genes Cells 13: 1127-1140

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	TATA-box-binding protein (protein)

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3AAD \| pdb_00003aad	Download File View File

Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction

Akai, Y., Adachi, N., Hayashi, Y., Eitoku, M., Sano, N., Natsume, R., Kudo, N., Tanokura, M., Senda, T., Horikoshi, M.

(2010) Proc Natl Acad Sci U S A 107: 8153-8158

Released	2010-04-28
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Histone chaperone ASF1A (protein) Transcription initiation factor TFIID subunit 1 (protein)
Unique Ligands	SO4

1 to 11 of 11 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1IMJ | pdb_00001imj

CRYSTAL STRUCTURE OF THE HUMAN CCG1/TAFII250-INTERACTING FACTOR B (CIB)

1IXV | pdb_00001ixv

Crystal Structure Analysis of homolog of oncoprotein gankyrin, an interactor of Rb and CDK4/6

1KP0 | pdb_00001kp0

The Crystal Structure Analysis of Creatine Amidinohydrolase from Actinobacillus

1WG0 | pdb_00001wg0

Structural comparison of Nas6p protein structures in two different crystal forms

1WG3 | pdb_00001wg3

Structural analysis of yeast nucleosome-assembly factor CIA1p

2E50 | pdb_00002e50

Crystal structure of SET/TAF-1beta/INHAT

2IO5 | pdb_00002io5

Crystal structure of the CIA- histone H3-H4 complex

2RNZ | pdb_00002rnz

Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1

2RO0 | pdb_00002ro0

Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1

2Z8U | pdb_00002z8u

Methanococcus jannaschii TBP

3AAD | pdb_00003aad

Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IMJ | pdb_00001imj

1IXV | pdb_00001ixv

1KP0 | pdb_00001kp0

1WG0 | pdb_00001wg0

1WG3 | pdb_00001wg3

2E50 | pdb_00002e50

2IO5 | pdb_00002io5

2RNZ | pdb_00002rnz

2RO0 | pdb_00002ro0

2Z8U | pdb_00002z8u

3AAD | pdb_00003aad