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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Houry, W.A."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Escherichia coli K-12 (9)
	Neisseria meningitidis (8)
	Homo sapiens (6)
	synthetic construct (4)
	Escherichia coli (2)
	Escherichia coli BL21(DE3) (2)
	Plasmodium falciparum 3D7 (2)
	Escherichia coli str. K-12 substr. MG1655 (1)
	Neisseria meningitidis MC58 (1)
	Saccharomyces cerevisiae (1)

More...

Taxonomy

	Bacteria (22)
	Eukaryota (9)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (8)
	2.5 - 3.0 (8)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)
	> 4.5 (5)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (8)
	2015 - 2019 (10)
	2020 - 2024 (11)

Enzyme Classification Name

	Hydrolases (22)
	Lyases (7)

Symmetry Type

	Dihedral (22)
	Cyclic (5)
	Asymmetric (5)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Small proteins (1)

AllSelected

1 to 25 of 31 Structures

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1OVX \| pdb_00001ovx	Download File View File

NMR structure of the E. coli ClpX chaperone zinc binding domain dimer

Donaldson, L.W., Kwan, J., Wojtyra, U., Houry, W.A.

(2003) J Biological Chem 278: 48991-48996

Released	2003-12-30
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	ATP-dependent Clp protease ATP-binding subunit clpX (protein)
Unique Ligands	ZN

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1Y7O \| pdb_00001y7o	Download File View File

The structure of Streptococcus pneumoniae A153P ClpP

Kimber, M.S., Gribun, A., Ching, R., Sprangers, R., Fiebig, K.M., Houry, W.A.

(2005) J Biological Chem 280: 16185-16196

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Streptococcus pneumoniae
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	CA

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2L6J \| pdb_00002l6j	Download File View File

Tah1 complexed by MEEVD

Jimenez, B., Ugwu, F., Zhao, R., Orti, L., Houry, W.A., Pineda-Lucena, A.

(2012) J Biological Chem 287: 5698-5709

Released	2011-12-28
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	C-terminus Hsp90 chaperone peptide MEEVD (protein) TPR repeat-containing protein associated with Hsp90 (protein)

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3HLN \| pdb_00003hln	Download File View File

Crystal structure of ClpP A153C mutant with inter-heptamer disulfide bonds

Kimber, M.S., Yu, A.Y.H., Borg, M., Chan, H.S., Houry, W.A.

(2010) Structure 18: 798-808

Released	2010-07-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	CA

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3N75 \| pdb_00003n75	Download File View File

X-ray Crystal Structure of the Escherichia coli Inducible Lysine Decarboxylase LdcI

Kanjee, U., Alexopoulos, E., Pai, E.F., Houry, W.A.

(2011) EMBO J 30: 931-944

Released	2011-02-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Lysine decarboxylase, inducible (protein)
Unique Ligands	G4P, GOL, P6G

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3Q16 \| pdb_00003q16	Download File View File

Linkage between the Bacterial Acid Stress and Stringent Responses: The Structure of the Inducible Lysine Decarboxylase

El Bakkouri, M., Pai, E.F., Houry, W.A.

(2011) EMBO J 30: 931-944

Released	2011-02-16
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Lysine decarboxylase, inducible (protein)

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4GM2 \| pdb_00004gm2	Download File View File

The crystal structure of a peptidase from plasmodium falciparum

El Bakkouri, M., Jung, P., Wernimont, A.K., Calmettes, C., Hui, R., Houry, W.A., Structural Genomics Consortium (SGC)

(2013) J Biological Chem 288: 1022-1031

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)

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4HNK \| pdb_00004hnk	Download File View File

Crystal structure of an Enzyme

El Bakkouri, M., Calmettes, C., Wernimont, A.K., Houry, W.A., Hui, R., Structural Genomics Consortium (SGC)

(2013) J Biological Chem 288: 1022-1031

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	GOL

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4UPB \| pdb_00004upb	Download File View File

Electron cryo-microscopy of the complex formed between the hexameric ATPase RavA and the decameric inducible decarboxylase LdcI

Malet, H., Liu, K., El Bakkouri, M., Chan, S.W.S., Effantin, G., Bacia, M., Houry, W.A., Gutsche, I.

(2014) Elife 3: 03653

Released	2014-08-20
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Escherichia coli K-12
Macromolecule	ATPASE RAVA (protein) LYSINE DECARBOXYLASE, INDUCIBLE (protein)

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4UPF \| pdb_00004upf	Download File View File

Assembly principles of the unique cage formed by the ATPase RavA hexamer and the lysine decarboxylase LdcI decamer

Malet, H., Liu, K., El Bakkouri, M., Chan, S.W.S., Effantin, G., Bacia, M., Houry, W.A., Gutsche, I.

(2014) Elife 3: 03653

Released	2014-08-20
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	ATPASE RAVA (protein) LYSINE DECARBOXYLASE, INDUCIBLE (protein)

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5DKP \| pdb_00005dkp	Download File View File

Crystal Structure of N. meningitidis ClpP in complex with agonist ADEP A54556.

Goodreid, J.D., Janetzko, J., Santa Maria Jr., J.P., Wong, K., Leung, E., Eger, B.T., Bryson, S., Pai, E.F., Gray-Owen, S.D., Walker, S., Houry, W.A., Batey, R.A.

(2016) J Med Chem 59: 624-646

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.381 Å
Organisms	Neisseria meningitidis MC58 synthetic construct
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein) agonist ADEP A54556 (protein)
Unique Ligands	K, NA

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5FKX \| pdb_00005fkx	Download File View File

Structure of E.coli inducible lysine decarboxylase at active pH

Kandiah, E., Carriel, D., Perard, J., Malet, H., Bacia, M., Liu, K., Chan, S.W.S., Houry, W.A., Ollagnier de Choudens, S., Elsen, S., Gutsche, I.

(2016) Sci Rep 6: 24601

Released	2016-09-21
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Escherichia coli K-12
Macromolecule	LYSINE DECARBOXYLASE, INDUCIBLE (protein)

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5FKZ \| pdb_00005fkz	Download File View File

Structure of E.coli Constitutive lysine decarboxylase

Kandiah, E., Carriel, D., Perard, J., Malet, H., Bacia, M., Liu, K., Chan, S.W.S., Houry, W.A., Ollagnier de Choudens, S., Elsen, S., Gutsche, I.

(2016) Sci Rep 6: 24601

Released	2016-09-21
Method	ELECTRON MICROSCOPY 5.5 Å
Organisms	Escherichia coli K-12
Macromolecule	LYSINE DECARBOXYLASE, CONSTITUTIVE (protein)

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5FL2 \| pdb_00005fl2	Download File View File

Revisited cryo-EM structure of Inducible lysine decarboxylase complexed with LARA domain of RavA ATPase

Kandiah, E., Carriel, D., Perard, J., Malet, H., Bacia, M., Liu, K., Chan, S.W.S., Houry, W.A., Ollagnier de Choudens, S., Elsen, S., Gutsche, I.

(2016) Sci Rep 6: 24601

Released	2016-09-21
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Escherichia coli K-12
Macromolecule	ATPASE RAVA (protein) LYSINE DECARBOXYLASE, INDUCIBLE (protein)

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6BBA \| pdb_00006bba	Download File View File

Crystal structure of human mitochondrial ClpP complex with acyldepsipeptide ADEP-28

Mabanglo, M.F., Houry, W.A.

(2018) Cell Chem Biol 25: 1017-1030.e9

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein) Acyldepsipeptide ADEP-28 (protein)

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6NAH \| pdb_00006nah	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease in complex with Acyldepsipeptide-14 (ADEP-14)

Mabanglo, M.F., Houry, W.A.

(2019) Commun Biol 2: 410-410

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Neisseria meningitidis synthetic construct
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein) Acyldepsipeptide-14 (protein)
Unique Ligands	OCA

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6NAQ \| pdb_00006naq	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease in Apo form

Houry, W.A., Mabanglo, M.F., Pai, E.F., Eger, B.T., Bryson, S.

(2019) Commun Biol 2: 410-410

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.022 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	K

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6NAW \| pdb_00006naw	Download File View File

Crystal structure of Neisseria meningitidis ClpP E58A activated mutant

Mabanglo, M.F., Houry, W.A.

(2019) Commun Biol 2: 410-410

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.399 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)

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6NAY \| pdb_00006nay	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease E31A+E58A activated double mutant

Mabanglo, M.F., Houry, W.A.

(2019) Commun Biol 2: 410-410

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)

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6NB1 \| pdb_00006nb1	Download File View File

Crystal structure of Escherichia coli ClpP protease complexed with small molecule activator, ACP1-06

Mabanglo, M.F., Houry, W.A., Eger, B.T., Bryson, S., Pai, E.F.

(2019) Commun Biol 2: 410-410

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	GOL, KHS

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6VFS \| pdb_00006vfs	Download File View File

ClpXP from Neisseria meningitidis - Conformation A

Ripstein, Z.A., Vahidi, S., Houry, W.A., Rubinstein, J.L., Kay, L.E.

(2020) Elife 9:

Released	2020-01-22
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli BL21(DE3) Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) Unidentified protein substrate (protein)
Unique Ligands	ADP, ATP, MG

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6VFX \| pdb_00006vfx	Download File View File

ClpXP from Neisseria meningitidis - Conformation B

Ripstein, Z.A., Vahidi, S., Houry, W.A., Rubinstein, J.L., Kay, L.E.

(2020) Elife 9:

Released	2020-01-22
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli BL21(DE3) Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) Unidentified peptide substrate (protein)
Unique Ligands	ADP, ATP, MG

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6W9T \| pdb_00006w9t	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease complex with small molecule activator ACP1-06

Mabanglo, M.F., Houry, W.A.

(2020) ACS Infect Dis 6: 3224-3236

Released	2020-12-09
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	K, KHS

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7UGC \| pdb_00007ugc	Download File View File

Structure of the N-terminal domain of ViaA

Lemak, A., Reichheld, S., Bhandari, V., Houliston, S., Arrowsmith, C.H., Sharpe, S., Houry, W.A.

To be published

Released	2023-03-29
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Protein ViaA (protein)

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7UVM \| pdb_00007uvm	Download File View File

Crystal structure of human ClpP protease in complex with TR-27

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	OX0

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1OVX | pdb_00001ovx

1Y7O | pdb_00001y7o

2L6J | pdb_00002l6j

3HLN | pdb_00003hln

3N75 | pdb_00003n75

3Q16 | pdb_00003q16

4GM2 | pdb_00004gm2

4HNK | pdb_00004hnk

4UPB | pdb_00004upb

4UPF | pdb_00004upf

5DKP | pdb_00005dkp

5FKX | pdb_00005fkx

5FKZ | pdb_00005fkz

5FL2 | pdb_00005fl2

6BBA | pdb_00006bba

6NAH | pdb_00006nah

6NAQ | pdb_00006naq

6NAW | pdb_00006naw

6NAY | pdb_00006nay

6NB1 | pdb_00006nb1

6VFS | pdb_00006vfs

6VFX | pdb_00006vfx

6W9T | pdb_00006w9t

7UGC | pdb_00007ugc

7UVM | pdb_00007uvm