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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lee, E.H."

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Search Summary

This query matches 640 Structures.

Refinements

Structure Determination Methodology

experimental (640)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (246)
	Homo sapiens (65)
	synthetic construct (47)
	Saccharomyces cerevisiae (43)
	Escherichia coli K-12 (27)
	Aspergillus nidulans FGSC A4 (25)
	Photorhabdus laumondii subsp. laumondii TTO1 (21)
	Aspergillus fumigatus A1163 (20)
	Mus musculus (20)
	Methanosarcina barkeri str. Fusaro (18)

More...

Taxonomy

	Eukaryota (431)
	Bacteria (166)
	other sequences (47)
	Archaea (44)
	Duplodnaviria (3)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (634)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (640)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (32)
	1.5 - 2.0 (164)
	2.0 - 2.5 (109)
	2.5 - 3.0 (271)
	3.0 - 3.5 (51)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (12)
	2005 - 2009 (31)
	2010 - 2014 (133)
	2015 - 2019 (300)
	2020 - 2024 (157)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (355)
	Oxidoreductases (76)
	Transferases (56)
	Lyases (16)
	Ligases (9)
	Isomerases (1)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)

Symmetry Type

	Cyclic (464)
	Asymmetric (158)
	Dihedral (28)
	Tetrahedral (6)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a+b) (236)
	Artifacts (219)
	Alpha and beta proteins (a/b) (44)
	All beta proteins (24)
	Multi-domain proteins (alpha and beta) (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 640 Structures

Page 1 of 26

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1G0U \| pdb_00001g0u	Download File View File

A GATED CHANNEL INTO THE PROTEASOME CORE PARTICLE

Groll, M., Bajorek, M., Kohler, A., Moroder, L., Rubin, D.M., Huber, R., Glickman, M.H., Finley, D.

(2000) Nat Struct Biol 7: 1062-1067

Released	2000-11-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	MG

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1G65 \| pdb_00001g65	Download File View File

Crystal structure of epoxomicin:20s proteasome reveals a molecular basis for selectivity of alpha,beta-epoxyketone proteasome inhibitors

Groll, M., Kim, K.B., Kairies, N., Huber, R., Crews, C.

(2000) J Am Chem Soc 122: 1237-1238

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

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1J2P \| pdb_00001j2p	Download File View File

alpha-ring from the proteasome from archaeoglobus fulgidus

Groll, M., Brandstetter, H., Bartunik, H., Bourenkow, G., Huber, R.

(2003) J Mol Biology 327: 75-83

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Proteasome alpha subunit (protein)

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1J2Q \| pdb_00001j2q	Download File View File

20S proteasome in complex with calpain-Inhibitor I from archaeoglobus fulgidus

Groll, M., Brandstetter, H., Bartunik, H., Bourenkow, G., Huber, R.

(2003) J Mol Biology 327: 75-83

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Proteasome alpha subunit (protein) Proteasome beta subunit (protein)
Unique Ligands	CIB

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1JD2 \| pdb_00001jd2	Download File View File

Crystal Structure of the yeast 20S Proteasome:TMC-95A complex: A non-covalent Proteasome Inhibitor

Groll, M., Koguchi, Y., Huber, R., Kohno, J.

(2001) J Mol Biology 311: 543-548

Released	2002-02-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Apiospora montagnei Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

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1K32 \| pdb_00001k32	Download File View File

Crystal structure of the tricorn protease

Brandstetter, H., Kim, J.-S., Groll, M., Huber, R.

(2001) Nature 414: 466-470

Released	2001-12-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	tricorn protease (protein)

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1MT3 \| pdb_00001mt3	Download File View File

Crystal Structure of the Tricorn Interacting Factor Selenomethionine-F1

Goettig, P., Groll, M., Kim, J.-S., Huber, R., Brandstetter, H.

(2002) EMBO J 21: 5343-5352

Released	2002-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	MES

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1MTZ \| pdb_00001mtz	Download File View File

Crystal Structure of the Tricorn Interacting Factor F1

Goettig, P., Groll, M., Kim, J.-S., Huber, R., Brandstetter, H.

(2002) EMBO J 21: 5343-5352

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)

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1MU0 \| pdb_00001mu0	Download File View File

Crystal Structure of the Tricorn Interacting Factor F1 Complex with PCK

Goettig, P., Groll, M., Kim, J.-S., Huber, R., Brandstetter, H.

(2002) EMBO J 21: 5343-5352

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PHK

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1N6D \| pdb_00001n6d	Download File View File

Tricorn protease in complex with tetrapeptide chloromethyl ketone derivative

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum synthetic construct
Macromolecule	RVRK (protein) Tricorn protease (protein)
Unique Ligands	D10

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1N6E \| pdb_00001n6e	Download File View File

tricorn protease in complex with a tridecapeptide chloromethyl ketone derivative

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermoplasma acidophilum synthetic construct
Macromolecule	DQTQKAAAELTFF (protein) Tricorn protease (protein)

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1N6F \| pdb_00001n6f	Download File View File

tricorn protease in complex with Z-Phe-diketo-Arg-Glu-Phe

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermoplasma acidophilum
Macromolecule	tricorn protease (protein)
Unique Ligands	DKT

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1NED \| pdb_00001ned	Download File View File

CRYSTAL STRUCTURE OF HSLV (CLPQ) AT 3.8 ANGSTROMS RESOLUTION

Bochtler, M., Ditzel, L., Groll, M., Huber, R.

(1997) Proc Natl Acad Sci U S A 94: 6070-6074

Released	1998-04-08
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Escherichia coli
Macromolecule	HSLV (protein)

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1RYP \| pdb_00001ryp	Download File View File

CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST AT 2.4 ANGSTROMS RESOLUTION

Groll, M., Ditzel, L., Loewe, J., Stock, D., Bochtler, M., Bartunik, H.D., Huber, R.

(1997) Nature 386: 463-471

Released	1998-04-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	MG

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1XQV \| pdb_00001xqv	Download File View File

Crystal structure of inactive F1-mutant G37A

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)

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1XQW \| pdb_00001xqw	Download File View File

Crystal structure of F1-mutant S105A complex with PHE-LEU

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	LEU, PHE

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1XQX \| pdb_00001xqx	Download File View File

Crystal structure of F1-mutant S105A complex with PCK

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PCS

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1XQY \| pdb_00001xqy	Download File View File

Crystal structure of F1-mutant S105A complex with PRO-LEU-GLY-GLY

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	PLGG (protein) Proline iminopeptidase (protein)
Unique Ligands	PRO

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1XRL \| pdb_00001xrl	Download File View File

Crystal structure of active site F1-mutant Y205F complex with inhibitor PCK

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PHK

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1XRM \| pdb_00001xrm	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Ala-Phe

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	ALA, PHE

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1XRN \| pdb_00001xrn	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Phe-Ala

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	ALA

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1XRO \| pdb_00001xro	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Phe-Leu

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	LEU

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1XRP \| pdb_00001xrp	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Pro-Leu-Gly-Gly

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	PLGG (protein) Proline iminopeptidase (protein)
Unique Ligands	PRO