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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lee, J.H."

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Search Summary

This query matches 203 Structures.

Refinements

Structure Determination Methodology

experimental (203)

Scientific Name of Source Organism

	Homo sapiens (30)
	Colwellia psychrerythraea 34H (10)
	Helicobacter pylori (10)
	Staphylococcus aureus (10)
	Halorhodospira halophila (7)
	Paenisporosarcina sp. TG-14 (7)
	Rattus norvegicus (7)
	synthetic construct (7)
	uncultured bacterium (7)
	Acinetobacter baumannii (6)

More...

Taxonomy

	Bacteria (134)
	Eukaryota (65)
	Riboviria (14)
	other sequences (7)
	Eukaryota (eukaryotes) (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (190)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (6)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (200)
	RNA (5)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (54)
	2.0 - 2.5 (66)
	2.5 - 3.0 (50)
	3.0 - 3.5 (15)
	3.5 - 4.0 (2)
	4.0 - 4.5 (4)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (34)
	2010 - 2014 (30)
	2015 - 2019 (73)
	2020 - 2024 (58)

Enzyme Classification Name

	Hydrolases (38)
	Oxidoreductases (31)
	Transferases (28)
	Isomerases (8)
	Lyases (4)
	Ligases (3)

Symmetry Type

	Asymmetric (91)
	Cyclic (67)
	Dihedral (37)
	Octahedral (8)
	Tetrahedral (3)

SCOP Classification

	All alpha proteins (32)
	Alpha and beta proteins (a/b) (31)
	Artifacts (22)
	All beta proteins (17)
	Alpha and beta proteins (a+b) (25)
	Multi-domain proteins (alpha and beta) (3)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 203 Structures

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1HOX \| pdb_00001hox	Download File View File

CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH FRUCTOSE-6-PHOSPHATE

Jeffrey, C.J., Lee, J.H., Chang, K.Z., Patel, V.

(2001) Biochemistry 40: 7799-7805

Released	2001-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PHOSPHOGLUCOSE ISOMERASE (protein)
Unique Ligands	F6P

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1N7E \| pdb_00001n7e	Download File View File

Crystal structure of the sixth PDZ domain of GRIP1

Im, Y.J., Park, S.H., Rho, S.H., Lee, J.H., Kang, G.B., Sheng, M., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 8501-8507

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	AMPA receptor interacting protein GRIP (protein)

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1N7F \| pdb_00001n7f	Download File View File

Crystal structure of the sixth PDZ domain of GRIP1 in complex with liprin C-terminal peptide

Im, Y.J., Park, S.H., Rho, S.H., Lee, J.H., Kang, G.B., Sheng, M., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 8501-8507

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	8-mer peptide from interacting protein (liprin) (protein) AMPA receptor interacting protein GRIP (protein)

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1PIB \| pdb_00001pib	Download File View File

Solution structure of DNA containing CPD opposited by GA

Lee, J.H., Park, C.J., Shin, J.S., Choi, B.S.

(2004) Nucleic Acids Res 32: 2474-2481

Released	2004-05-18
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPAPTPTPAPCPGPC)-3' (nucleic acid) 5'-D(GPCPGPTPGPAPTPGPCPG)-3' (nucleic acid)

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1Q3O \| pdb_00001q3o	Download File View File

Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization

Im, Y.J., Lee, J.H., Park, S.H., Park, S.J., Rho, S.-H., Kang, G.B., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 48099-48104

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Shank1 (protein)
Unique Ligands	BR

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1Q3P \| pdb_00001q3p	Download File View File

Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization

Im, Y.J., Lee, J.H., Park, S.H., Park, S.J., Rho, S.-H., Kang, G.B., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 48099-48104

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rattus norvegicus
Macromolecule	C-terminal hexapeptide from Guanylate kinase-associated protein (protein) Shank1 (protein)

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1SNH \| pdb_00001snh	Download File View File

Solution structure of the DNA Decamer Duplex Containing Double TG Mismatches of Cis-syn Cyclobutane Pyrimidine Dimer

Lee, J.H., Park, C.J., Shin, J.S., Ikegami, T., Akutsu, H., Choi, B.S.

(2004) Nucleic Acids Res 32: 2474-2481

Released	2004-05-18
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPAPTPTPAPCPGPC)-3' (nucleic acid) 5'-D(GPCPGPTPGPGPTPGPCPG)-3' (nucleic acid)

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1XHK \| pdb_00001xhk	Download File View File

Crystal structure of M. jannaschii Lon proteolytic domain

Im, Y.J., Na, Y., Kang, G.B., Rho, S.-H., Kim, M.-K., Lee, J.H., Chung, C.H., Eom, S.H.

(2004) J Biological Chem 279: 53451-53457

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Putative protease La homolog (protein)
Unique Ligands	MES, SO4

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1XNG \| pdb_00001xng	Download File View File

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B., Kim, Y.S., Im, Y.J., Rho, S.H., Lee, J.H., Eom, S.H.

(2005) Proteins 58: 985-988

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Helicobacter pylori
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)
Unique Ligands	ATP, DND, MG

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1XNH \| pdb_00001xnh	Download File View File

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B., Kim, Y.S., Im, Y.J., Rho, S.H., Lee, J.H., Eom, S.H.

(2005) Proteins 58: 985-988

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)

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1XTB \| pdb_00001xtb	Download File View File

Crystal Structure of Rabbit Phosphoglucose Isomerase Complexed with Sorbitol-6-Phosphate

Lee, J.H., Jeffery, C.J.

(2005) Protein Sci 14: 727-734

Released	2005-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	phosphoglucose isomerase (protein)
Unique Ligands	S6P

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1YNX \| pdb_00001ynx	Download File View File

Solution structure of DNA binding domain A (DBD-A) of S.cerevisiae Replication Protein A (RPA)

Park, C.J., Lee, J.H., Choi, B.S.

(2005) Nucleic Acids Res 33: 4172-4181

Released	2006-01-10
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Replication factor-A protein 1 (protein)

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2AZ0 \| pdb_00002az0	Download File View File

Flock House virus B2-dsRNA Complex (P212121)

Chao, J.A., Lee, J.H., Chapados, B.R., Debler, E.W., Schneemann, A., Williamson, J.R.

(2005) Nat Struct Mol Biol 12: 952-957

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Flock House virus
Macromolecule	B2 protein (protein) 5'-R(GPCPAP(5BU)PGPGPAPCPGPCPGP(5BU)PCPCPAP(5BU)PGPC)-3' (nucleic acid)

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2AZ2 \| pdb_00002az2	Download File View File

Flock House virus B2-dsRNA Complex (P4122)

Chao, J.A., Lee, J.H., Chapados, B.R., Debler, E.W., Schneemann, A., Williamson, J.R.

(2005) Nat Struct Mol Biol 12: 952-957

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Flock House virus
Macromolecule	B2 protein (protein) 5'-R(GPCPAP(5BU)PGPGPAPCPGPCPGP(5BU)PCPCPAP(5BU)PGPC)-3' (nucleic acid)

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2B7N \| pdb_00002b7n	Download File View File

Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori

Kim, M.K., Im, Y.J., Lee, J.H., Eom, S.H.

(2006) Proteins 63: 252-255

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	Probable nicotinate-nucleotide pyrophosphorylase (protein)
Unique Ligands	NTM, SO4

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2B7P \| pdb_00002b7p	Download File View File

Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori with phthalic acid

Kim, M.K., Im, Y.J., Lee, J.H., Eom, S.H.

(2006) Proteins 63: 252-255

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Helicobacter pylori
Macromolecule	Probable nicotinate-nucleotide pyrophosphorylase (protein)
Unique Ligands	PHT, SO4

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2B7Q \| pdb_00002b7q	Download File View File

Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori with nicotinate mononucleotide

Kim, M.K., Im, Y.J., Lee, J.H., Eom, S.H.

(2006) Proteins 63: 252-255

Released	2006-02-21
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Helicobacter pylori
Macromolecule	Probable nicotinate-nucleotide pyrophosphorylase (protein)
Unique Ligands	NCN

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2B8I \| pdb_00002b8i	Download File View File

Crystal Structure and Functional Studies Reveal that PAS Factor from Vibrio vulnificus is a Novel Member of the Saposin-Fold Family

Lee, J.H., Yang, S.T., Rho, S.H., Im, Y.J., Kim, S.Y., Kim, Y.R., Kim, M.K., Kang, G.B., Kim, J.I., Rhee, J.H., Eom, S.H.

(2006) J Mol Biology 355: 491-500

Released	2006-02-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio vulnificus
Macromolecule	PAS factor (protein)

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2FB9 \| pdb_00002fb9	Download File View File

Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes

Lee, J.H., Na, Y., Eom, S.H.

(2006) Proteins 64: 1078-1082

Released	2006-08-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus caldophilus
Macromolecule	D-alanine:D-alanine ligase (protein)

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2FJK \| pdb_00002fjk	Download File View File

Crystal structure of Fructose-1,6-Bisphosphate Aldolase in Thermus caldophilus

Lee, J.H., Im, Y.J., Rho, S.-H., Kim, M.-K., Kang, G.B., Eom, S.H.

(2006) Biochem Biophys Res Commun 347: 616-625

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus caldophilus
Macromolecule	Fructose-bisphosphate aldolase (protein)
Unique Ligands	13P

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2IE8 \| pdb_00002ie8	Download File View File

Crystal structure of Thermus caldophilus phosphoglycerate kinase in the open conformation

Lee, J.H., Im, Y.J., Eom, S.H.

(2006) Biochem Biophys Res Commun 350: 1044-1049

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus caldophilus
Macromolecule	phosphoglycerate kinase (protein)

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2KX6 \| pdb_00002kx6	Download File View File

Signaling state of Photoactive Yellow Protein

Ramachandran, P.L., Lovett, J.E., Carl, P.J., Cammarata, M., Lee, J.H., Yang, J.O., Ihee, H., Timmel, C.R., van Thor, J.

(2011) J Am Chem Soc 133: 9395-9404

Released	2011-06-15
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

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2O4C \| pdb_00002o4c	Download File View File

Crystal Structure of D-Erythronate-4-phosphate Dehydrogenase Complexed with NAD

Ha, J.Y., Lee, J.H., Kim, K.H., Kim, D.J., Lee, H.H., Kim, H.K., Yoon, H.J., Suh, S.W.

(2007) J Mol Biology 366: 1294-1304

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Erythronate-4-phosphate dehydrogenase (protein)
Unique Ligands	GOL, NAD, PO4, TLA

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2PYY \| pdb_00002pyy	Download File View File

Crystal Structure of the GluR0 ligand-binding core from Nostoc punctiforme in complex with (L)-glutamate

Lee, J.H., Kang, G.B., Lim, H.-H., Ree, M., Park, C.-S., Eom, S.H.

(2008) J Mol Biology 376: 308-316

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	Ionotropic glutamate receptor bacterial homologue (protein)
Unique Ligands	GLU

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2QZX \| pdb_00002qzx	Download File View File

Secreted aspartic proteinase (Sap) 5 from Candida albicans

Lee, J.H., Ruge, E., Borelli, C., Maskos, K., Huber, R.

(2008) Proteins 72: 1308-1319

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Candida albicans Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Candidapepsin-5 (protein) Pepstatin (protein)

1 to 25 of 203 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1HOX | pdb_00001hox

1N7E | pdb_00001n7e

1N7F | pdb_00001n7f

1PIB | pdb_00001pib

1Q3O | pdb_00001q3o

1Q3P | pdb_00001q3p

1SNH | pdb_00001snh

1XHK | pdb_00001xhk

1XNG | pdb_00001xng

1XNH | pdb_00001xnh

1XTB | pdb_00001xtb

1YNX | pdb_00001ynx

2AZ0 | pdb_00002az0

2AZ2 | pdb_00002az2

2B7N | pdb_00002b7n

2B7P | pdb_00002b7p

2B7Q | pdb_00002b7q

2B8I | pdb_00002b8i

2FB9 | pdb_00002fb9

2FJK | pdb_00002fjk

2IE8 | pdb_00002ie8

2KX6 | pdb_00002kx6

2O4C | pdb_00002o4c

2PYY | pdb_00002pyy

2QZX | pdb_00002qzx