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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lewis, S."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (16)
	Bacillus subtilis (5)
	Drosophila melanogaster (4)
	Danio rerio (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (21)
	Bacteria (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (26)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (3)
	> 4.5 (2)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (6)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (11)
	Dihedral (1)

SCOP Classification

	Artifacts (6)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (4)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 26 Structures

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4FI9 \| pdb_00004fi9	Download File View File

Structure of human SUN-KASH complex

Wang, W.J., Shi, Z.B.

(2012) Cell Res 22: 1440-1452

Released	2012-07-18
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Nesprin-2 (protein) SUN domain-containing protein 2 (protein)

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4FZA \| pdb_00004fza	Download File View File

Crystal structure of MST4-MO25 complex

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZD \| pdb_00004fzd	Download File View File

Crystal structure of MST4-MO25 complex with WSF motif

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	C-terminal peptide from Serine/threonine-protein kinase MST4 (protein) Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZF \| pdb_00004fzf	Download File View File

Crystal structure of MST4-MO25 complex with DKI

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	DKI

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4GEH \| pdb_00004geh	Download File View File

Crystal structure of MST4 dimerization domain complex with PDCD10

Zhang, M., Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 680-688

Released	2013-04-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death protein 10 (protein) Serine/threonine-protein kinase MST4 (protein)

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4HK1 \| pdb_00004hk1	Download File View File

Crystal Structure of PCNA from Drosophila melanogaster

Wang, K., Shi, Z.B., Zhou, Z.C.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 387-392

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Drosophila melanogaster
Macromolecule	Proliferating cell nuclear antigen (protein)

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4HKD \| pdb_00004hkd	Download File View File

Crystal structure of human MST2 SARAH domain

Liu, G.G., Shi, Z.B., Zhou, Z.C.

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 3 (protein)

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4KGB \| pdb_00004kgb	Download File View File

Structure of succinyl-CoA: 3-ketoacid CoA transferase from Drosophila melanogaster

Wang, Y.C., Shi, Z.B., Zhang, M.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 1089-1093

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Drosophila melanogaster
Macromolecule	Succinyl-CoA:3-ketoacid-coenzyme A transferase (protein)
Unique Ligands	SO4

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4KZG \| pdb_00004kzg	Download File View File

Crystal structure of zebrafish MO25

Zhang, Z.Z., Shi, Z.B., Zhang, M.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 989-993

Released	2013-09-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio
Macromolecule	Zgc:86716 (protein)

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4NT4 \| pdb_00004nt4	Download File View File

Crystal structure of the kinase domain of Gilgamesh isoform I from Drosophila melanogaster

Chen, C.C., Shi, Z.B., Zhou, Z.C.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 438-443

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Drosophila melanogaster
Macromolecule	Gilgamesh, isoform I (protein)
Unique Ligands	GOL, SO4

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4RV0 \| pdb_00004rv0	Download File View File

Crystal structure of TN complex

Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

To be published

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Drosophila melanogaster
Macromolecule	Nuclear protein localization protein 4 homolog (protein) Transitional endoplasmic reticulum ATPase TER94 (protein)
Unique Ligands	SO4

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4Z8M \| pdb_00004z8m	Download File View File

Crystal structure of the MAVS-TRAF6 complex

Shi, Z.B., Zhou, Z.

(2015) J Biological Chem 290: 26811-26820

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Mitochondrial antiviral-signaling protein (protein) TNF receptor-associated factor 6 (protein)

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4ZDR \| pdb_00004zdr	Download File View File

Crystal structure of 14-3-3[zeta]-LKB1 fusion protein

Ding, S., Shi, Z.B.

(2015) Acta Crystallogr F Struct Biol Commun 71: 1114-1119

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.899 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	14-3-3 protein zeta/delta,GGSGGS linker,Serine/threonine-protein kinase STK11 (protein)
Unique Ligands	GOL, SO4, TME

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5GZB \| pdb_00005gzb	Download File View File

Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA

He, F., Shi, Z.B., Zhou, Z.C.

(2017) Oncogene 36: 4362-4369

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-3 (protein) DNA (5'-D(GPAPGPAPGPGPAPAPTPGPCPAPA)-3') (nucleic acid) DNA (5'-D(TPTPGPCPAPTPTPCPCPTPCPTPC)-3') (nucleic acid)
Unique Ligands	GOL, PO4

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5WXN \| pdb_00005wxn	Download File View File

Structure of the LKB1 and 14-3-3 complex

Ding, S., Shi, Z.B.

(2017) Acta Crystallogr F Struct Biol Commun 73: 196-201

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Serine/threonine-protein kinase STK11 (protein)

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5XY9 \| pdb_00005xy9	Download File View File

Structure of the MST4 and 14-3-3 complex

Shi, Z.B., Zhou, Z.C.

To be published

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Peptide from Serine/threonine-protein kinase 26 (protein)
Unique Ligands	GOL, PE4

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6WG3 \| pdb_00006wg3	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ANP

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6WG4 \| pdb_00006wg4	Download File View File

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in south-open conformation

Shi, Z.B., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Structural maintenance of chromosomes protein (protein) Structural maintenance of chromosomes protein 3 (protein)

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6WG6 \| pdb_00006wg6	Download File View File

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation

Shi, Z.B., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Homo sapiens
Macromolecule	Structural maintenance of chromosomes protein (protein) Structural maintenance of chromosomes protein 3 (protein) poly(dT) (nucleic acid)

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6WGE \| pdb_00006wge	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex without STAG1

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG

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7W1M \| pdb_00007w1m	Download File View File

Cryo-EM structure of human cohesin-CTCF-DNA complex

Shi, Z.B., Bai, X.C., Yu, H.

(2023) Mol Cell 83: 2856-2871.e8

Released	2023-05-31
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, ZN

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8Y13 \| pdb_00008y13	Download File View File

Cryo-EM structure of anti-phage defense associated DSR2 tetramer (H171A)

Li, F.X., Shi, Z.B., Wang, R.W., Xu, Q., Yang, R., Wu, Z.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Bacillus subtilis
Macromolecule	SIR2-like domain-containing protein (protein)

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8Y34 \| pdb_00008y34	Download File View File

Cryo-EM structure of anti-phage defense associated DSR2 (H171A) (map2)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Bacillus subtilis
Macromolecule	SIR2-like domain-containing protein (protein)

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8Y3M \| pdb_00008y3m	Download File View File

Cryo-EM structure of DSR2-DSAD1 complex (cross-linked)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Bacillus subtilis
Macromolecule	DSR anti-defence 1 (protein) SIR2-like domain-containing protein (protein)

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8Y3W \| pdb_00008y3w	Download File View File

The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (same side)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Bacillus subtilis
Macromolecule	DSR anti-defence 1 (protein) SIR2-like domain-containing protein (protein)

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4FI9 | pdb_00004fi9

4FZA | pdb_00004fza

4FZD | pdb_00004fzd

4FZF | pdb_00004fzf

4GEH | pdb_00004geh

4HK1 | pdb_00004hk1

4HKD | pdb_00004hkd

4KGB | pdb_00004kgb

4KZG | pdb_00004kzg

4NT4 | pdb_00004nt4

4RV0 | pdb_00004rv0

4Z8M | pdb_00004z8m

4ZDR | pdb_00004zdr

5GZB | pdb_00005gzb

5WXN | pdb_00005wxn

5XY9 | pdb_00005xy9

6WG3 | pdb_00006wg3

6WG4 | pdb_00006wg4

6WG6 | pdb_00006wg6

6WGE | pdb_00006wge

7W1M | pdb_00007w1m

8Y13 | pdb_00008y13

8Y34 | pdb_00008y34

8Y3M | pdb_00008y3m

8Y3W | pdb_00008y3w