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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Milner, J."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (6)
	Human immunodeficiency virus 1 (6)
	Human immunodeficiency virus type 1 BH10 (4)
	Brome mosaic virus (3)
	Escherichia coli (2)
	Lederbergvirus P22 (1)
	Mus musculus (1)
	Rattus norvegicus (1)

Taxonomy

	Riboviria (9)
	Eukaryota (8)
	Bacteria (2)
	Duplodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (13)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (14)
	NA-hybrid (6)
	RNA (6)

Refinement Resolution (Å)

	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (5)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (6)
	Isomerases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (7)
	Dihedral (3)
	Icosahedral (3)
	Helical (1)

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1 to 14 of 14 Structures

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1TT9 \| pdb_00001tt9	Download File View File

Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer

Mao, Y., Vyas, N.K., Vyas, M.N., Chen, D.H., Ludtke, S.J., Chiu, W., Quiocho, F.A.

(2004) EMBO J 23: 2963-2971

Released	2005-06-28
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Rattus norvegicus
Macromolecule	Formimidoyltransferase-cyclodeaminase (Formiminotransferase- cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein) (protein)

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3C9V \| pdb_00003c9v	Download File View File

C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM

Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.

(2008) Structure 16: 441-448

Released	2008-09-02
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Escherichia coli
Macromolecule	60 kDa chaperonin (protein)

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3CAU \| pdb_00003cau	Download File View File

D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM

Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.

(2008) Structure 16: 441-448

Released	2008-09-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli
Macromolecule	60 kDa chaperonin (protein)

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3J7L \| pdb_00003j7l	Download File View File

Full virus map of brome mosaic virus

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7M \| pdb_00003j7m	Download File View File

Virus model of brome mosaic virus (first half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7N \| pdb_00003j7n	Download File View File

Virus model of brome mosaic virus (second half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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5GAI \| pdb_00005gai	Download File View File

Probabilistic Structural Models of Mature P22 Bacteriophage Portal, Hub, and Tailspike proteins

Pintilie, G., Chen, D.H., Haase-Pettingell, C.A., King, J.A., Chiu, W.

(2016) Biophys J 110: 827-839

Released	2016-02-17
Method	ELECTRON MICROSCOPY 10.5 Å
Organisms	Lederbergvirus P22
Macromolecule	Peptidoglycan hydrolase gp4 (protein) Portal protein (protein) Tail fiber protein (protein)

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6B19 \| pdb_00006b19	Download File View File

Architecture of HIV-1 reverse transcriptase initiation complex core

Larsen, K.P., Mathiharan, Y.K., Chen, D.H., Puglisi, J.D., Skiniotis, G., Puglisi, E.V.

(2018) Nature 557: 118-122

Released	2018-04-25
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	reverse transcriptase p51 subunit (protein) reverse transcriptase p66 subunit (protein) RNA genome fragment (nucleic acid) tRNA lysine3 (hybrid)

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6VCC \| pdb_00006vcc	Download File View File

Cryo-EM structure of the Dvl2 DIX filament

Enos, M., Kan, W., Muennich, S., Chen, D.H., Skiniotis, G., Weis, W.I.

(2020) Elife 9:

Released	2020-04-29
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Mus musculus
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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6WB1 \| pdb_00006wb1	Download File View File

+3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state)

Larsen, K.P., Jackson, L.N., Kappel, K., Zhang, J., Chen, D.H., Puglisi, E.V.

(2020) J Mol Biology 432: 4499-4522

Released	2020-06-24
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Human immunodeficiency virus type 1 BH10
Macromolecule	REVERSE TRANSCRIPTASE/RIBONUCLEASE H (protein) reverse transcriptase p51 subunit (protein) HIV-1 viral RNA genome fragment (nucleic acid) tRNA lysine 3 (hybrid)

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6WB2 \| pdb_00006wb2	Download File View File

+3 extended HIV-1 reverse transcriptase initiation complex core (displaced state)

Larsen, K.P., Jackson, L.N., Kappel, K., Zhang, J., Chen, D.H., Puglisi, E.V.

(2020) J Mol Biology 432: 4499-4522

Released	2020-06-24
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Reverse transcriptase/ribonuclease H (protein) reverse transcriptase p51 subunit (protein) HIV-1 viral RNA genome fragment (nucleic acid) tRNA lysine 3 (hybrid)

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7KJV \| pdb_00007kjv	Download File View File

Structure of HIV-1 reverse transcriptase initiation complex core

Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.

(2021) Nat Commun 12: 2500-2500

Released	2021-03-17
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) reverse transcriptase p51 subunit (protein) HIV-1 viral RNA fragment (nucleic acid) tRNA lysine 3 fragment with GNRA tetraloop (hybrid)
Unique Ligands	BOG, MG

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7KJW \| pdb_00007kjw	Download File View File

Structure of HIV-1 reverse transcriptase initiation complex core with efavirenz

Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.

(2021) Nat Commun 12: 2500-2500

Released	2021-03-17
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) reverse transcriptase p51 subunit (protein) HIV-1 viral RNA fragment (nucleic acid) tRNA lysine 3 fragment with GNRA tetraloop (hybrid)
Unique Ligands	EFZ, MG

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7KJX \| pdb_00007kjx	Download File View File

Structure of HIV-1 reverse transcriptase initiation complex core with nevirapine

Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.

(2021) Nat Commun 12: 2500-2500

Released	2021-03-17
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) reverse transcriptase p51 subunit (protein) HIV-1 viral RNA fragment (nucleic acid) tRNA lysine 3 fragment with GNRA tetraloop (hybrid)
Unique Ligands	MG, NVP

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1TT9 | pdb_00001tt9

Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer

3C9V | pdb_00003c9v

C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM

3CAU | pdb_00003cau

D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM

3J7L | pdb_00003j7l

Full virus map of brome mosaic virus

3J7M | pdb_00003j7m

Virus model of brome mosaic virus (first half data set)

3J7N | pdb_00003j7n

Virus model of brome mosaic virus (second half data set)

5GAI | pdb_00005gai

Probabilistic Structural Models of Mature P22 Bacteriophage Portal, Hub, and Tailspike proteins

6B19 | pdb_00006b19

Architecture of HIV-1 reverse transcriptase initiation complex core

6VCC | pdb_00006vcc

Cryo-EM structure of the Dvl2 DIX filament

6WB1 | pdb_00006wb1

+3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state)

6WB2 | pdb_00006wb2

+3 extended HIV-1 reverse transcriptase initiation complex core (displaced state)

7KJV | pdb_00007kjv

Structure of HIV-1 reverse transcriptase initiation complex core

7KJW | pdb_00007kjw

Structure of HIV-1 reverse transcriptase initiation complex core with efavirenz

7KJX | pdb_00007kjx

Structure of HIV-1 reverse transcriptase initiation complex core with nevirapine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

1TT9 | pdb_00001tt9

3C9V | pdb_00003c9v

3CAU | pdb_00003cau

3J7L | pdb_00003j7l

3J7M | pdb_00003j7m

3J7N | pdb_00003j7n

5GAI | pdb_00005gai

6B19 | pdb_00006b19

6VCC | pdb_00006vcc

6WB1 | pdb_00006wb1

6WB2 | pdb_00006wb2

7KJV | pdb_00007kjv

7KJW | pdb_00007kjw

7KJX | pdb_00007kjx