RCSB PDB: Search

2KFV \| pdb_00002kfv	Download File View File

Structure of the amino-terminal domain of human FK506-binding protein 3 / Northeast Structural Genomics Consortium Target HT99A

Sunnerhagen, M., Davis, T., Gutmanas, A., Fares, C., Ouyang, H., Lemak, A., Li, Y., Weigelt, J., Bountra, C., Edwards, A., Arrowsmith, C.H., Dhe-Paganon, S., Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)

To be published

Released	2009-06-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FK506-binding protein 3 (protein)

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2PQW \| pdb_00002pqw	Download File View File

Crystal structure of L3MBTL1 in complex with H4K20Me2 (residues 17-25), trigonal form

Allali-Hassani, A., Liu, Y., Herzanych, N., Ouyang, H., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.R., Structural Genomics Consortium (SGC)

(2007) Nat Struct Mol Biol 14: 1229-1230

Released	2007-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Lethal(3)malignant brain tumor-like protein (protein)
Unique Ligands	ACT

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2RJC \| pdb_00002rjc	Download File View File

Crystal structure of L3MBTL1 protein in complex with MES

Allali-Hassani, A., Liu, Y., Herzanych, N., Ouyang, H., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.R., Structural Genomics Consortium (SGC)

(2007) Nat Struct Mol Biol 14: 1229-1230

Released	2007-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like protein (protein)
Unique Ligands	MES, SO4

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2RJD \| pdb_00002rjd	Download File View File

Crystal structure of L3MBTL1 protein

Allali-Hassani, A., Liu, Y., Herzanych, N., Ouyang, H., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.R., Structural Genomics Consortium (SGC)

(2007) Nat Struct Mol Biol 14: 1229-1230

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like protein (protein)

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2RJE \| pdb_00002rje	Download File View File

Crystal structure of L3MBTL1 in complex with H4K20Me2 (residues 17-25), orthorhombic form II

Allali-Hassani, A., Liu, Y., Herzanych, N., Ouyang, H., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.R., Structural Genomics Consortium (SGC)

(2007) Nat Struct Mol Biol 14: 1229-1230

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Lethal(3)malignant brain tumor-like protein (protein)
Unique Ligands	CL

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2RJF \| pdb_00002rjf	Download File View File

Crystal structure of L3MBTL1 in complex with H4K20Me2 (residues 12-30), orthorhombic form I

Allali-Hassani, A., Liu, Y., Herzanych, N., Ouyang, H., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.R., Structural Genomics Consortium (SGC)

(2007) Nat Struct Mol Biol 14: 1229-1230

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Lethal(3)malignant brain tumor-like protein (protein)

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3C5K \| pdb_00003c5k	Download File View File

Crystal structure of human HDAC6 zinc finger domain

Dong, A., Ravichandran, M., Schuetz, A., Loppnau, P., Li, Y., MacKenzie, F., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Dhe-Paganon, S., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	ZN

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3DM1 \| pdb_00003dm1	Download File View File

Crystal structure of the complex of human chromobox homolog 3 (CBX3) with peptide

Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2012) PLoS One 7: e35376-e35376

Released	2008-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 3 (protein) Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 (protein)

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3F2U \| pdb_00003f2u	Download File View File

Crystal structure of human chromobox homolog 1 (CBX1)

Amaya, M.F., Ravichandran, M., Tempel, W., Wernimont, A.K., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Botchkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 1 (protein)

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3FDT \| pdb_00003fdt	Download File View File

Crystal structure of the complex of human chromobox homolog 5 (CBX5) with H3K9(me)3 peptide

Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2009-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Chromobox protein homolog 5 (protein) H3K9(me)3 peptide (protein)

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3FM0 \| pdb_00003fm0	Download File View File

Crystal structure of WD40 protein Ciao1

Dong, A., Ravichandran, M., Crombet, L., Cossar, D., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) Protein Cell 2: 202-214

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Protein CIAO1 (protein)
Unique Ligands	SO4

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3GFC \| pdb_00003gfc	Download File View File

Crystal Structure of Histone-binding protein RBBP4

Amaya, M.F., Dong, A., Li, Z., He, H., Ni, S., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) Protein Cell 2: 202-214

Released	2009-04-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein)

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3GV4 \| pdb_00003gv4	Download File View File

Crystal structure of human HDAC6 zinc finger domain and ubiquitin C-terminal peptide RLRGG

Dong, A., Ravichandran, M., Loppnau, P., Li, Y., MacKenzie, F., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Dhe-Paganon, S., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein) ubiquitin C-terminal peptide RLRGG (protein)
Unique Ligands	CA, ZN

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3GV6 \| pdb_00003gv6	Download File View File

Crystal Structure of human chromobox homolog 6 (CBX6) with H3K9 peptide

Dong, A., Amaya, M.F., Li, Z., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Chromobox protein homolog 6 (protein) Histone H3K9me3 peptide (protein)

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3H91 \| pdb_00003h91	Download File View File

Crystal structure of the complex of human chromobox homolog 2 (CBX2) and H3K27 peptide

Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Chromobox protein homolog 2 (protein) H3K27 peptide (protein)

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3I2N \| pdb_00003i2n	Download File View File

Crystal Structure of WD40 repeats protein WDR92

Amaya, M.F., Li, Z., He, H., Seitova, A., Ni, S., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) Protein Cell 2: 202-214

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 92 (protein)

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3I3C \| pdb_00003i3c	Download File View File

Crystal Structural of CBX5 Chromo Shadow Domain

Amaya, M.F., Li, Z., Li, Y., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 5 (protein)
Unique Ligands	NA

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3I8Z \| pdb_00003i8z	Download File View File

Crystal structure of human chromobox homolog 4 (CBX4)

Amaya, M.F., Zhihong, L., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	E3 SUMO-protein ligase CBX4 (protein)

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3I90 \| pdb_00003i90	Download File View File

Crystal structure of human chromobox homolog 6 (CBX6) with H3K27 peptide

Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2009-09-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 6 (protein) H3K27 peptide (protein)

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3I91 \| pdb_00003i91	Download File View File

Crystal structure of human chromobox homolog 8 (CBX8) with H3K9 peptide

Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 521-529

Released	2009-09-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 8 (protein) H3K9 peptide (protein)

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3JZN \| pdb_00003jzn	Download File View File

Structure of EED in apo form

Xu, C., Bian, C.B., Ouyang, H., Qiu, W., MacKenzie, F., Min, J., Structural Genomics Consortium (SGC)

(2010) Proc Natl Acad Sci U S A 107: 19266-19271

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Polycomb protein EED (protein)

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3KUP \| pdb_00003kup	Download File View File

Crystal Structure of the CBX3 Chromo Shadow Domain

Tempel, W., Li, Z., Li, Y., Kozieradzki, I., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 3 (protein)
Unique Ligands	UNX

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3MTS \| pdb_00003mts	Download File View File

Chromo Domain of Human Histone-Lysine N-Methyltransferase SUV39H1

Lam, R., Li, Z., Wang, J., Crombet, L., Walker, J.R., Ouyang, H., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)

(2012) PLoS One 7: e52977-e52977

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SUV39H1 (protein)

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3P8H \| pdb_00003p8h	Download File View File

Crystal structure of L3MBTL1 (MBT repeat) in complex with a nicotinamide antagonist

Lam, R., Herold, J.M., Ouyang, H., Tempel, W., Gao, C., Ravichandran, M., Senisterra, G., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Kireev, D., Frye, S.V., Brown, P.J., Structural Genomics Consortium (SGC)

(2011) J Med Chem 54: 2504-2511

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like protein (protein)
Unique Ligands	GOL, P8H, SO4

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3PHD \| pdb_00003phd	Download File View File

Crystal structure of human HDAC6 in complex with ubiquitin

Dong, A., Qui, W., Ravichandran, M., Schuetz, A., Loppnau, P., Li, F., Mackenzie, F., Kozieradzki, I., Ouyang, H., Structural Genomics Consortium (SGC)

(2012) J Biological Chem 287: 2317-2327

Released	2011-02-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein) Polyubiquitin (protein)
Unique Ligands	ZN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KFV | pdb_00002kfv

2PQW | pdb_00002pqw

2RJC | pdb_00002rjc

2RJD | pdb_00002rjd

2RJE | pdb_00002rje

2RJF | pdb_00002rjf

3C5K | pdb_00003c5k

3DM1 | pdb_00003dm1

3F2U | pdb_00003f2u

3FDT | pdb_00003fdt

3FM0 | pdb_00003fm0

3GFC | pdb_00003gfc

3GV4 | pdb_00003gv4

3GV6 | pdb_00003gv6

3H91 | pdb_00003h91

3I2N | pdb_00003i2n

3I3C | pdb_00003i3c

3I8Z | pdb_00003i8z

3I90 | pdb_00003i90

3I91 | pdb_00003i91

3JZN | pdb_00003jzn

3KUP | pdb_00003kup

3MTS | pdb_00003mts

3P8H | pdb_00003p8h

3PHD | pdb_00003phd