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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ovadi, J."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Bos taurus (4)
	Homo sapiens (4)
	synthetic construct (1)

Taxonomy

	Eukaryota (8)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (3)
	2015 - 2019 (4)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (4)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

	All alpha proteins (4)
	Alpha and beta proteins (a/b) (4)
	Artifacts (2)

AllSelected

1 to 8 of 8 Structures

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1A29 \| pdb_00001a29	Download File View File

CALMODULIN COMPLEXED WITH TRIFLUOPERAZINE (1:2 COMPLEX)

Bocskei, Zs., Harmat, V., Vertessy, B.G., Ovadi, J., Naray-Szabo, G.

(1998) Biochemistry 37: 15300-15310

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Bos taurus
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, TFP

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1QIV \| pdb_00001qiv	Download File View File

CALMODULIN COMPLEXED WITH N-(3,3,-DIPHENYLPROPYL)-N'-[1-R-(3,4-BIS-BUTOXYPHENYL)-ETHYL]-PROPYLENEDIAMINE (DPD), 1:2 COMPLEX

Harmat, V., Bocskei, Z.S., Vertessy, B.G., Naray-Szabo, G., Ovadi, J.

(2000) J Mol Biology 297: 747

Released	2000-03-28
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Bos taurus
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, DPD

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1QIW \| pdb_00001qiw	Download File View File

Calmodulin complexed with N-(3,3,-diphenylpropyl)-N'-[1-R-(3,4-bis-butoxyphenyl)-ethyl]-propylenediamine (DPD)

Harmat, V., Bocskei, Z.S., Vertessy, B.G., Ovadi, J., Naray-Szabo, G.

(2000) J Mol Biology 297: 747

Released	2000-03-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, DPD

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1XA5 \| pdb_00001xa5	Download File View File

Structure of Calmodulin in complex with KAR-2, a bis-indol alkaloid

Horvath, I., Harmat, V., Hlavanda, E., Naray-Szabo, G., Ovadi, J.

(2005) J Biological Chem 280: 8266-8274

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Bos taurus
Macromolecule	Calmodulin (protein)
Unique Ligands	CA, KAR

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4RMG \| pdb_00004rmg	Download File View File

Human Sirt2 in complex with SirReal2 and NAD+

Rumpf, T., Schiedel, M., Karaman, B., Roessler, C., North, B.J., Lehotzky, A., Olah, J., Ladwein, K.I., Schmidtkunz, K., Gajer, M., Pannek, M., Steegborn, C., Sinclair, D.A., Gerhardt, S., Ovadi, J., Schutkowski, M., Sippl, W., Einsle, O., Jung, M.

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TE, NAD, ZN

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4RMH \| pdb_00004rmh	Download File View File

Human Sirt2 in complex with SirReal2 and Ac-Lys-H3 peptide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Ac-Lys-H3 peptide (protein) NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TE, ZN

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4RMI \| pdb_00004rmi	Download File View File

Human Sirt2 in complex with SirReal1 and Ac-Lys-OTC peptide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Ac-Lys-OTC peptide (protein) NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TK, ZN

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4RMJ \| pdb_00004rmj	Download File View File

Human Sirt2 in complex with ADP ribose and nicotinamide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	AR6, EDO, NA, NCA, PEG, PGE, ZN

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A29 | pdb_00001a29

CALMODULIN COMPLEXED WITH TRIFLUOPERAZINE (1:2 COMPLEX)

1QIV | pdb_00001qiv

CALMODULIN COMPLEXED WITH N-(3,3,-DIPHENYLPROPYL)-N'-[1-R-(3,4-BIS-BUTOXYPHENYL)-ETHYL]-PROPYLENEDIAMINE (DPD), 1:2 COMPLEX

1QIW | pdb_00001qiw

Calmodulin complexed with N-(3,3,-diphenylpropyl)-N'-[1-R-(3,4-bis-butoxyphenyl)-ethyl]-propylenediamine (DPD)

1XA5 | pdb_00001xa5

Structure of Calmodulin in complex with KAR-2, a bis-indol alkaloid

4RMG | pdb_00004rmg

Human Sirt2 in complex with SirReal2 and NAD+

4RMH | pdb_00004rmh

Human Sirt2 in complex with SirReal2 and Ac-Lys-H3 peptide

4RMI | pdb_00004rmi

Human Sirt2 in complex with SirReal1 and Ac-Lys-OTC peptide

4RMJ | pdb_00004rmj

Human Sirt2 in complex with ADP ribose and nicotinamide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A29 | pdb_00001a29

1QIV | pdb_00001qiv

1QIW | pdb_00001qiw

1XA5 | pdb_00001xa5

4RMG | pdb_00004rmg

4RMH | pdb_00004rmh

4RMI | pdb_00004rmi

4RMJ | pdb_00004rmj