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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Patel, D.J."

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Search Summary

This query matches 497 Structures.

Refinements

Structure Determination Methodology

experimental (497)

Scientific Name of Source Organism

	Homo sapiens (158)
	Mus musculus (36)
	synthetic construct (35)
	Arabidopsis thaliana (26)
	Thermococcus onnurineus (17)
	Saccharolobus solfataricus P2 (15)
	Drosophila melanogaster (11)
	Thermococcus onnurineus NA1 (11)
	Bacteroidales bacterium (8)
	Thermus thermophilus HB27 (8)

More...

Taxonomy

	Eukaryota (263)
	Bacteria (91)
	Archaea (46)
	other sequences (35)
	Eukaryota (eukaryotes) (14)
	Riboviria (6)
	Duplodnaviria (4)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (370)
	SOLUTION NMR (88)
	ELECTRON MICROSCOPY (39)

Polymer Entity Type

	Protein (380)
	RNA (155)
	DNA (144)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (90)
	2.0 - 2.5 (101)
	2.5 - 3.0 (120)
	3.0 - 3.5 (66)
	3.5 - 4.0 (21)
	> 4.5 (2)

Release Date

	1990 - 1994 (10)
	1995 - 1999 (39)
	2000 - 2004 (28)
	2005 - 2009 (86)
	2010 - 2014 (187)
	2015 - 2019 (96)
	2020 - 2024 (50)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (95)
	Transferases (91)
	Oxidoreductases (12)
	Isomerases (7)
	Ligases (9)
	Lyases (2)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (287)
	Cyclic (111)
	Dihedral (6)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (35)
	All alpha proteins (30)
	Artifacts (30)
	All beta proteins (31)
	Alpha and beta proteins (a/b) (12)
	Small proteins (8)
	Multi-domain proteins (alpha and beta) (5)
	Peptides (8)

AllSelected

1 to 25 of 497 Structures

Page 1 of 20

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107D	Download File View File

SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX

Lin, C.H., Patel, D.J.

(1995) J Mol Biol 248: 162-179

Released	1995-05-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPTPTPTPTPC)-3') (nucleic acid) DNA (5'-D(GPAPAPAPAPGPG)-3') (nucleic acid)
Unique Ligands	DUO

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134D	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Patel, D.J., Radhakrishnan, I.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA TRIPLEX (nucleic acid)

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135D	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Radhakrishnan, I., Patel, D.J.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	DNA TRIPLEX (nucleic acid)

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136D	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Radhakrishnan, I., Patel, D.J.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	DNA TRIPLEX (nucleic acid)

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139D	Download File View File

SOLUTION STRUCTURE OF A PARALLEL-STRANDED G-QUADRUPLEX DNA

Patel, D.J., Wang, Y.

(1993) J Mol Biol 234: 1171-1183

Released	1994-01-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPTPGPGPGPGP*T)-3') (nucleic acid)

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143D	Download File View File

SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX

Wang, Y., Patel, D.J.

(1993) Structure 1: 263-282

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(APGPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGPG)-3') (nucleic acid)

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146D	Download File View File

SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX

Sastry, M., Patel, D.J.

(1993) Biochemistry 32: 6588-6604

Released	1995-03-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPCPGPCPGPA)-3') (nucleic acid)
Unique Ligands	CRH, MG
Unique branched monosaccharides	DDA, DDL, MDA

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149D	Download File View File

SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES

Radhakrishnan, I., Patel, D.J.

(1994) Structure 2: 17

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPAPTPTPC)-3' (nucleic acid) 5'-D(CPTPTPGPTPCPC)-3' (nucleic acid) 5'-D(GPAPAPTPAPGP*G)-3' (nucleic acid)

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177D	Download File View File

SOLUTION STRUCTURE AND HYDRATION PATTERNS OF A PYRIMIDINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING A NOVEL T(DOT)CG TRIPLE

Radhakrishnan, I., Patel, D.J.

(1994) J Mol Biol 241: 600-619

Released	1994-10-15
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPAPAPCPAPGPGPTPTPTPTPTCPCPTPGPTPTPCPTPTPTPTPTCPTPTPTPTPCP*C)-3') (nucleic acid)

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179D	Download File View File

SOLUTION STRUCTURE OF THE D(T-C-G-A) DUPLEX AT ACIDIC PH: A PARALLEL-STRANDED HELIX CONTAINING C+.C, G.G AND A.A PAIRS

Wang, Y., Patel, D.J.

(1994) J Mol Biol 242: 508-526

Released	1994-07-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPCPGPA)-3') (nucleic acid)

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186D	Download File View File

SOLUTION STRUCTURE OF THE TETRAHYMENA TELOMERIC REPEAT D(T2G4)4 G-TETRAPLEX

Wang, Y., Patel, D.J.

(1994) Structure 2: 1141-1156

Released	1994-11-01
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPTPGPGPGPGPTPTPGPGPGPGPTPTPGPGPGPGPTPTPGPGPGPG)-3') (nucleic acid)

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193D	Download File View File

SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX

Chen, H., Patel, D.J.

(1995) J Mol Biol 246: 164

Released	1995-02-27
Method	SOLUTION NMR
Macromolecule	QUINOMYCIN (protein) DNA (5'-D(APCPAPCPGPTPGPT)-3') (nucleic acid)
Unique Ligands	HQU

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199D	Download File View File

Solution structure of the monoalkylated mitomycin c-DNA complex

Sastry, M., Fiala, R., Lipman, R., Tomasz, M., Patel, D.J.

(1995) J Mol Biol 247: 338-359

Released	1995-02-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D((DI)PCPAPCPGPTPCP(DI)PT)-3') (nucleic acid) DNA (5'-D(APCPGPAPCPGPTPGPC)-3') (nucleic acid)
Unique Ligands	MOC

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1A4T	Download File View File

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.

(1998) Nat Struct Biol 5: 203-212

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	20-MER BASIC PEPTIDE (protein) BOXB RNA (nucleic acid)

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1A6H	Download File View File

DNA QUADRUPLEX CONTAINING GCGC TETRAD, NMR, 4 STRUCTURES

Kettani, A., Kumar, R.A., Patel, D.J.

(1995) J Mol Biol 254: 638-656

Released	1998-06-17
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPCPGPGPTPTPTPGPCPGPG)-3') (nucleic acid)

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1A8N	Download File View File

SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES

Kettani, A., Bouaziz, S., Gorin, A., Zhao, H., Jones, R., Patel, D.J.

(1998) J Mol Biol 282: 619-636

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS (nucleic acid)

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1A8W	Download File View File

A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES

Bouaziz, S., Kettani, A., Patel, D.J.

(1998) J Mol Biol 282: 637-652

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK BASE PAIRS (nucleic acid)

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1AFF	Download File View File

DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES

Kettani, A., Bouaziz, S., Wang, W., Jones, R.A., Patel, D.J.

(1997) Nat Struct Biol 4: 382-389

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	QUADRUPLEX DNA (5'-D(TPAPGP*G)-3') (nucleic acid)

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1AM0	Download File View File

AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES

Jiang, F., Kumar, R.A., Jones, R.A., Patel, D.J.

(1996) Nature 382: 183-186

Released	1997-07-23
Method	SOLUTION NMR
Macromolecule	RNA APTAMER (nucleic acid)
Unique Ligands	AMP

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1AW4	Download File View File

STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES

Lin, C.H., Patel, D.J.

(1997) Chem Biol 4: 817-832

Released	1998-04-15
Method	SOLUTION NMR
Macromolecule	ATP-BINDING DNA APTAMER (nucleic acid)
Unique Ligands	AMP

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1AX6	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES

Mao, B., Gorin, A.A., Gu, Z., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14479-14490

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG) (nucleic acid)
Unique Ligands	AF

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1AX7	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Mao, B., Gu, Z., Gorin, A.A., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14491-14501

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG) (nucleic acid)
Unique Ligands	AF

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1AXL	Download File View File

SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Kolbanovskiy, A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13780-13790

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG) (nucleic acid)
Unique Ligands	BAP

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1AXO	Download File View File

STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13769-13779

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC) (nucleic acid)
Unique Ligands	BAP

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1AXU	Download File View File

SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES

Gu, Z., Gorin, A.A., Krishnasami, R., Hingerty, B.E., Basu, A.K., Broyde, S., Patel, D.J.

(1999) Biochemistry 38: 10843-10854

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) (nucleic acid)
Unique Ligands	AP

1 to 25 of 497 Structures

Page 1 of 20

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