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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pinotsis, N."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (19)
	Zobellia galactanivorans (3)
	Chromobacterium violaceum (2)
	Alteromonas macleodii (1)

Taxonomy

	Eukaryota (19)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (25)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (12)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (8)
	2020 - 2024 (11)

Enzyme Classification Name

	Transferases (14)
	Oxidoreductases (2)
	Hydrolases (2)

Symmetry Type

	Cyclic (15)
	Asymmetric (8)
	Dihedral (2)

SCOP Classification

	All alpha proteins (5)
	Artifacts (5)
	All beta proteins (2)

AllSelected

1 to 25 of 25 Structures

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2BOI \| pdb_00002boi	Download File View File

1.1A Structure of Chromobacterium Violaceum Lectin CV2L in Complex with alpha-methyl-fucoside

Pokorna, M., Cioci, G., Perret, S., Rebuffet, E., Adam, J., Gilboa-Garber, N., Mitchell, E.P., Imberty, A., Wimmerova, M.

(2006) Biochemistry 45: 7501

Released	2006-05-25
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Chromobacterium violaceum
Macromolecule	CV-IIL LECTIN (protein)
Unique Ligands	CA, MFU

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2BV4 \| pdb_00002bv4	Download File View File

1.0A Structure of Chromobacterium Violaceum Lectin in Complex with alpha-methyl-mannoside

Pokorna, M., Cioci, G., Perret, S., Rebuffet, E., Adam, J., Gilboa-Garber, N., Mitchell, E.P., Imberty, A., Wimmerova, M.

(2006) Biochemistry 45: 7501

Released	2006-05-25
Method	X-RAY DIFFRACTION 1 Å
Organisms	Chromobacterium violaceum
Macromolecule	LECTIN CV-IIL (protein)
Unique Ligands	CA, MMA

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3LMW \| pdb_00003lmw	Download File View File

Crystal structure of iota-carrageenase family GH82 from A. fortis in absence of chloride ions

Rebuffet, E., Barbeyron, T., Jeudy, A., Czjzek, M., Michel, G.

(2010) Biochemistry 49: 7590-7599

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alteromonas macleodii
Macromolecule	Iota-carrageenase, CgiA (protein)
Unique Ligands	CA, NI, NO3

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3P2N \| pdb_00003p2n	Download File View File

Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that was annotated as 'hypothetical protein'

Rebuffet, E., Barbeyron, T., Czjzek, M., Michel, G.

(2011) Environ Microbiol 13: 1253-1270

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zobellia galactanivorans
Macromolecule	3,6-anhydro-alpha-L-galactosidase (protein)
Unique Ligands	CL, ZN

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4CIT \| pdb_00004cit	Download File View File

Crystal structure of the first bacterial vanadium dependant iodoperoxidase

Rebuffet, E., Delage, L., Fournier, J.B., Rzonca, J., Potin, P., Michel, G., Czjzek, M., Leblanc, C.

(2014) Appl Environ Microbiol 80: 7561

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	VANADIUM-DEPENDENT HALOPEROXIDASE (protein)
Unique Ligands	NA, VO4

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4USZ \| pdb_00004usz	Download File View File

Crystal structure of the first bacterial vanadium dependant iodoperoxidase

Rebuffet, E., Delage, L., Fournier, J.B., Rzonca, J., Potin, P., Michel, G., Czjzek, M., Leblanc, C.

(2014) Appl Environ Microbiol 80: 7561

Released	2014-10-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zobellia galactanivorans
Macromolecule	VANADIUM-DEPENDENT HALOPEROXIDASE (protein)
Unique Ligands	NA, VO4

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5DLX \| pdb_00005dlx	Download File View File

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR N-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-1-{3-methyl-[1,2,4]triazolo[4,3-b]pyridazin-6-yl}piperidine-4-carboxamide

Raux, B., Rebuffet, E., Betzi, S., Morelli, X.

(2016) ACS Chem Biol 11: 2140-2148

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5D2

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5DLZ \| pdb_00005dlz	Download File View File

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR 4-[(1-methyl-2-oxo-1,2-dihydroquinolin-4-yl)oxy]-N-({1-[(3-methylphe methyl]piperidin-4-yl}methyl)butanamide

Raux, B., Rebuffet, E., Betzi, S., Morelli, X.

(2016) ACS Chem Biol 11: 2140-2148

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5D1

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5EGU \| pdb_00005egu	Download File View File

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR 3-Butyl-8-(6-butyl-5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-ylsulfanylmethyl)-7-ethyl-3,7-dihydropurine-2,6-dione

Raux, B., Rebuffet, E., Betzi, S., Priet, S., Morelli, X.

(2016) J Med Chem 59: 1634-1641

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5NQ, EDO

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5EI4 \| pdb_00005ei4	Download File View File

First domain of human bromodomain BRD4 in complex with inhibitor 8-(5-Amino-1H-[1,2,4]triazol-3-ylsulfanylmethyl)-3-(4-chlorobenzyl)-7-ethyl-3,7-dihydropurine-2,6-dione

Raux, B., Rebuffet, E., Betzi, S., Morelli, X.

(2016) J Med Chem 59: 1634-1641

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5NV, EDO

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5EIS \| pdb_00005eis	Download File View File

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR 3-(4-Chlorobenzyl)-7-ethyl-3,7-dihydropurine-2,6-dione

Raux, B., Rebuffet, E., Betzi, S., Morelli, X.

(2016) J Med Chem 59: 1634-1641

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5OU, EDO

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5MQJ \| pdb_00005mqj	Download File View File

Crystal structure of dCK mutant C3S

Saez-Ayala, M., Rebuffet, E., Hammam, K., Gros, L., Lopez, S., Hajem, B., Humbert, M., Baudelet, E., Audebert, S., Betzi, S., Lugari, A., Combes, S., Pez, D., Letard, S., Mansfield, C., Moussy, A., de Sepulveda, P., Morelli, X., Dubreuil, P.

(2017) Nat Commun 8: 1420-1420

Released	2017-11-22
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	MG, UDP, UMP

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5MQL \| pdb_00005mql	Download File View File

Crystal structure of dCK mutant C3S in complex with masitinib and UDP

Rebuffet, E., Hammam, K., Saez-Ayala, M., Gros, L., Lopez, S., Hajem, B., Humbert, M., Baudelet, E., Audebert, S., Betzi, S., Lugari, A., Combes, S., Pez, D., Letard, S., Mansfield, C., Moussy, A., de Sepulveda, P., Morelli, X., Dubreuil, P.

(2017) Nat Commun 8: 1420-1420

Released	2017-11-22
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	DCM, G65, MG, UDP

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5MQT \| pdb_00005mqt	Download File View File

Crystal structure of dCK mutant C3S in complex with imatinib and UDP

(2017) Nat Commun 8: 1420-1420

Released	2017-11-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	DCM, MG, STI, UDP

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7ZI1 \| pdb_00007zi1	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the dCKi1 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	JCA, NA, UDP

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7ZI2 \| pdb_00007zi2	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the dCKi2 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J7W, NA, UDP

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7ZI3 \| pdb_00007zi3	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0642 inhibitor

Ben-Yaala, K., Saez-Ayala, M., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J98, NA, UDP

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7ZI5 \| pdb_00007zi5	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0274 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J9I, NA, UDP

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7ZI6 \| pdb_00007zi6	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0325 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	JAQ, NA, UDP

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7ZI7 \| pdb_00007zi7	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0345 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	JCM, NA, UDP

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7ZI8 \| pdb_00007zi8	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0602 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J5U, NA, UDP

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7ZI9 \| pdb_00007zi9	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0624 inhibitor

Saez-Ayala, M., Ben-Yaala, K., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J6M, NA, UDP

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7ZIA \| pdb_00007zia	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0634 inhibitor

Ben-Yaala, K., Saez-Ayala, M., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J29, NA, UDP

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7ZIB \| pdb_00007zib	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with UDP and the OR0635 inhibitor

Ben-Yaala, K., Saez-Ayala, M., Betzi, S., Rebuffet, E., Morelli, X.

(2023) Nat Commun 14: 3079-3079

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	J7I, NA, UDP

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8OOJ \| pdb_00008ooj	Download File View File

Crystal structure of dCK C4S-S74E mutant in complex with EdC and UDP

Saez-Ayala, M., Rebuffet, E., Betzi, S., Morelli, X.

(2024) Mol Cancer Ther 23: 683-699

Released	2023-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	UDP, VVC

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2BOI | pdb_00002boi

2BV4 | pdb_00002bv4

3LMW | pdb_00003lmw

3P2N | pdb_00003p2n

4CIT | pdb_00004cit

4USZ | pdb_00004usz

5DLX | pdb_00005dlx

5DLZ | pdb_00005dlz

5EGU | pdb_00005egu

5EI4 | pdb_00005ei4

5EIS | pdb_00005eis

5MQJ | pdb_00005mqj

5MQL | pdb_00005mql

5MQT | pdb_00005mqt

7ZI1 | pdb_00007zi1

7ZI2 | pdb_00007zi2

7ZI3 | pdb_00007zi3

7ZI5 | pdb_00007zi5

7ZI6 | pdb_00007zi6

7ZI7 | pdb_00007zi7

7ZI8 | pdb_00007zi8

7ZI9 | pdb_00007zi9

7ZIA | pdb_00007zia

7ZIB | pdb_00007zib

8OOJ | pdb_00008ooj