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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Rojas, A.L."

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Search Summary

This query matches 61 Structures.

Refinements

Structure Determination Methodology

experimental (61)

Scientific Name of Source Organism

	Homo sapiens (31)
	synthetic construct (10)
	Legionella pneumophila (4)
	Aspergillus awamori (3)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (3)
	Legionella pneumophila subsp. pneumophila ATCC 43290 (2)
	Paramecium bursaria Chlorella virus 1 (2)
	Penicillium sp. (2)
	Saccharolobus solfataricus (2)
	Helicobacter pylori (1)

More...

Taxonomy

	Eukaryota (37)
	Bacteria (13)
	other sequences (10)
	Archaea (2)
	Varidnaviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (60)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (61)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (18)
	2.0 - 2.5 (12)
	2.5 - 3.0 (11)
	3.0 - 3.5 (11)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (1)
	2010 - 2014 (10)
	2015 - 2019 (26)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (8)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	mpstruc (3)
	OPM (1)

Symmetry Type

	Asymmetric (47)
	Cyclic (12)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	All alpha proteins (5)
	All beta proteins (7)
	Alpha and beta proteins (a/b) (7)
	Artifacts (6)

AllSelected

1 to 25 of 61 Structures

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1TG7 \| pdb_00001tg7	Download File View File

Native structure of beta-galactosidase from Penicillium sp.

Rojas, A.L., Nagem, R.A.P., Neustroev, K.N., Arand, M., Adamska, M., Eneyskaya, E.V., Kulminskaya, A.A., Garratt, R.C., Golubev, A.M., Polikarpov, I.

(2004) J Mol Biology 343: 1281-1292

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Penicillium sp.
Macromolecule	beta-galactosidase (protein)
Unique Ligands	EDO, NA, NAG, PO4
Unique branched monosaccharides	BMA, MAN, NAG

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1XC6 \| pdb_00001xc6	Download File View File

Native Structure Of Beta-Galactosidase from Penicillium sp. in complex with Galactose

Rojas, A.L., Nagem, R.A.P., Neustroev, K.N., Arand, M., Adamska, M., Eneyskaya, E.V., Kulminskaya, A.A., Garratt, R.C., Golubev, A.M., Polikarpov, I.

(2004) J Mol Biology 343: 1281-1292

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Penicillium sp.
Macromolecule	Beta-Galactosidase (protein)
Unique Ligands	EDO, GAL, IOD, NA, NAG, PO4
Unique branched monosaccharides	BMA, MAN, NAG

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1Y4W \| pdb_00001y4w	Download File View File

Crystal structure of exo-inulinase from Aspergillus awamori in spacegroup P21

Nagem, R.A.P., Rojas, A.L., Golubev, A.M., Korneeva, O.S., Eneyskaya, E.V., Kulminskaya, A.A., Neustroev, K.N., Polikarpov, I.

(2004) J Mol Biology 344: 471-480

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aspergillus awamori
Macromolecule	exo-inulinase (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	NAG

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1Y9G \| pdb_00001y9g	Download File View File

Crystal structure of exo-inulinase from Aspergillus awamori complexed with fructose

Nagem, R.A.P., Rojas, A.L., Golubev, A.M., Korneeva, O.S., Eneyskaya, E.V., Kulminskaya, A.A., Neustroev, K.N., Polikarpov, I.

(2004) J Mol Biology 344: 471-480

Released	2004-12-21
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Aspergillus awamori
Macromolecule	exo-inulinase (protein)
Unique Ligands	FRU, NAG
Unique branched monosaccharides	NAG

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1Y9M \| pdb_00001y9m	Download File View File

Crystal structure of exo-inulinase from Aspergillus awamori in spacegroup P212121

Nagem, R.A.P., Rojas, A.L., Golubev, A.M., Korneeva, O.S., Eneyskaya, E.V., Kulminskaya, A.A., Neustroev, K.N., Polikarpov, I.

(2004) J Mol Biology 344: 471-480

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Aspergillus awamori
Macromolecule	exo-inulinase (protein)
Unique Ligands	GOL, MAN, NAG
Unique branched monosaccharides	MAN, NAG

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2R17 \| pdb_00002r17	Download File View File

Functional architecture of the retromer cargo-recognition complex

Hierro, A., Rojas, A.L., Rojas, R., Murthy, N., Effantin, G., Kajava, A.V., Steven, A.C., Bonifacino, J.S., Hurley, J.H.

(2007) Nature 449: 1063-1067

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Vacuolar protein sorting-associated protein 29 (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	GOL

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3ILN \| pdb_00003iln	Download File View File

X-ray structure of the laminarinase from Rhodothermus marinus

Bleicher, L., Golubev, A., Rojas, A.L., Nascimento, A.S., Polikarpov, I.

(2011) J Phys Chem B 115: 7940-7949

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Rhodothermus marinus
Macromolecule	Laminarinase (protein)
Unique Ligands	CA, GOL

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3L81 \| pdb_00003l81	Download File View File

Crystal structure of adaptor protein complex 4 (AP-4) mu4 subunit C-terminal domain, in complex with a sorting peptide from the amyloid precursor protein (APP)

Mardones, G.A., Rojas, A.L., Burgos, P.V., Dasilva, L.L.P., Prabhu, Y., Bonifacino, J.S., Hurley, J.H.

(2010) Dev Cell 18: 425-436

Released	2010-06-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	AP-4 complex subunit mu-1 (protein) Amyloid beta A4 protein (protein)
Unique Ligands	GOL

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3QDL \| pdb_00003qdl	Download File View File

Crystal structure of RdxA from Helicobacter pyroli

Rojas, A.L., Martinez-Julvez, M., Olekhnovich, I.N., Hoffman, P.S., Sancho, J.

(2012) FEBS J 279: 4306-4317

Released	2012-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Helicobacter pylori
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	FMN, GOL

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4IIK \| pdb_00004iik	Download File View File

Legionella pneumophila effector

Tascon, I., Chen, Y., Neunuebel, M.R., Rojas, A.L., Machner, M.P., Hierro, A.

(2013) PLoS Pathog 9: e1003382-e1003382

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Adenosine monophosphate-protein hydrolase SidD (protein)
Unique Ligands	CL, GOL, MG

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4IIP \| pdb_00004iip	Download File View File

Legionella pneumophila effector

Tascon, I., Chen, Y., Neunuebel, M.R., Rojas, A.L., Machner, M.P., Hierro, A.

(2013) PLoS Pathog 9: e1003382-e1003382

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Adenosine monophosphate-protein hydrolase SidD (protein)
Unique Ligands	CL, GOL

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4J2C \| pdb_00004j2c	Download File View File

GARP-SNARE Interaction

Abascal-Palacios, G., Schindler, C., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2013) Structure 21: 1698-1706

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens
Macromolecule	Syntaxin-6 (protein) Vacuolar protein sorting-associated protein 51 homolog (protein)

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4KTT \| pdb_00004ktt	Download File View File

Structural insights of MAT enzymes: MATa2b complexed with SAM

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2014) IUCrJ 1: 240-249

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens
Macromolecule	Methionine adenosyltransferase 2 subunit beta (protein) S-adenosylmethionine synthase isoform type-2 (protein)
Unique Ligands	EDO, MG, PO4, SAM

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4KTV \| pdb_00004ktv	Download File View File

Structural insights of MAT enzymes: MATa2b complexed with adenosine and pyrophosphate

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2014) IUCrJ 1: 240-249

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Methionine adenosyltransferase 2 subunit beta (protein) S-adenosylmethionine synthase isoform type-2 (protein)
Unique Ligands	ADN, EDO, MG, PO4, POP

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4KYI \| pdb_00004kyi	Download File View File

Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5

Lucas, M., Gaspar, A.H., Pallara, C., Rojas, A.L., Fernandez-Recio, J., Machner, M.P., Hierro, A.

(2014) Proc Natl Acad Sci U S A 111: E3514-E3523

Released	2014-08-13
Method	X-RAY DIFFRACTION 3.075 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Ras-related protein Rab-5C (protein) VipD (protein)
Unique Ligands	EDO, GNP, GOL, MG

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4NDN \| pdb_00004ndn	Download File View File

Structural insights of MAT enzymes: MATa2b complexed with SAM and PPNP

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2014) IUCrJ 1: 240-249

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens
Macromolecule	Methionine adenosyltransferase 2 subunit beta (protein) S-adenosylmethionine synthase isoform type-2 (protein)
Unique Ligands	EDO, MG, PPK, SAM

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5A19 \| pdb_00005a19	Download File View File

The structure of MAT2A in complex with PPNP.

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2016) Proc Natl Acad Sci U S A 113: 2104

Released	2016-02-17
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2 (protein)
Unique Ligands	EDO, K, MG, PEG, PG4, PPK

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5A1G \| pdb_00005a1g	Download File View File

The structure of Human MAT2A in complex with S-adenosylethionine and PPNP.

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2016) Proc Natl Acad Sci U S A 113: 2104

Released	2016-02-17
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2 (protein)
Unique Ligands	IMD, K, MG, MPD, PPK, S7M

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5A1I \| pdb_00005a1i	Download File View File

The structure of Human MAT2A in complex with SAM, Adenosine, Methionine and PPNP.

Murray, B., Antonyuk, S.V., Marina, A., Lu, S.C., Mato, J.M., Hasnain, S.S., Rojas, A.L.

(2016) Proc Natl Acad Sci U S A 113: 2104

Released	2016-03-09
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2 (protein)
Unique Ligands	ADN, EDO, K, MET, MG, PEG, PG4, PPK, SAM

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5F0J \| pdb_00005f0j	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0K \| pdb_00005f0k	Download File View File

Structure of VPS35 N terminal region

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.074 Å
Organisms	Homo sapiens
Macromolecule	Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, PG4, SO4

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5F0L \| pdb_00005f0l	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0M \| pdb_00005f0m	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1 (SeMet labeled)

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0P \| pdb_00005f0p	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1(L557M) (SeMet labeled)

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4, ZN