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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tani, K."

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Search Summary

This query matches 51 Structures.

Refinements

Structure Determination Methodology

experimental (51)

Scientific Name of Source Organism

	Homo sapiens (13)
	Sus scrofa (6)
	Caenorhabditis elegans (5)
	Mus musculus (5)
	Halorhodospira halophila (3)
	Rattus norvegicus (3)
	Allochromatium vinosum DSM 180 (2)
	Candida albicans (2)
	Cereibacter sphaeroides f. sp. denitrificans (2)
	Geobacillus stearothermophilus 10 (2)

More...

Taxonomy

	Eukaryota (33)
	Bacteria (18)
	Duplodnaviria (2)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (29)
	ELECTRON CRYSTALLOGRAPHY (12)
	X-RAY DIFFRACTION (9)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (51)

Refinement Resolution (Å)

	2.0 - 2.5 (9)
	2.5 - 3.0 (13)
	3.0 - 3.5 (6)
	3.5 - 4.0 (10)
	> 4.5 (12)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (9)
	2015 - 2019 (10)
	2020 - 2024 (24)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (12)
	Lyases (3)
	Translocases (6)

Membrane Protein Annotation

	PDBTM (42)
	MemProtMD (31)
	OPM (22)
	mpstruc (18)

Symmetry Type

	Asymmetric (29)
	Cyclic (16)
	Dihedral (6)

SCOP Classification

	Membrane and cell surface proteins and peptides (5)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)
	Artifacts (2)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 51 Structures

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1BM1 \| pdb_00001bm1	Download File View File

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE

Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1251-1256

Released	1999-04-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	DPG, RET

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1V9J \| pdb_00001v9j	Download File View File

Solution structure of a BolA-like protein from Mus musculus

Kasai, T., Inoue, M., Koshiba, S., Yabuki, T., Aoki, M., Nunokawa, E., Seki, E., Matsuda, T., Matsuda, N., Tomo, Y., Shirouzu, M., Terada, T., Obayashi, N., Hamana, H., Shinya, N., Tatsuguchi, A., Yasuda, S., Yoshida, M., Hirota, H., Matsuo, Y., Tani, K., Suzuki, H., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Protein Sci 13: 545-548

Released	2004-02-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	BolA-like protein RIKEN cDNA 1110025L05 (protein)

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2D57 \| pdb_00002d57	Download File View File

Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography

Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A., Fujiyoshi, Y.

(2005) J Mol Biology 355: 628-639

Released	2006-01-31
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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2XZB \| pdb_00002xzb	Download File View File

Pig Gastric H,K-ATPase with bound BeF and SCH28080

Abe, K., Tani, K., Fujiyoshi, Y.

(2011) Nat Commun 2: 155

Released	2011-01-26
Method	ELECTRON CRYSTALLOGRAPHY 7 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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2YN9 \| pdb_00002yn9	Download File View File

Cryo-EM structure of gastric H+,K+-ATPase with bound rubidium

Abe, K., Tani, K., Friedrich, T., Fujiyoshi, Y.

(2012) Proc Natl Acad Sci U S A 109: 18401

Released	2012-11-07
Method	ELECTRON CRYSTALLOGRAPHY 8 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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2ZZ9 \| pdb_00002zz9	Download File View File

Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography

Tani, K., Mitsuma, T., Hiroaki, Y., Kamegawa, A., Nishikawa, K., Tanimura, Y., Fujiyoshi, Y.

(2009) J Mol Biology 389: 694-706

Released	2009-06-09
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)
Unique Ligands	PEE

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3IXZ \| pdb_00003ixz	Download File View File

Pig gastric H+/K+-ATPase complexed with aluminium fluoride

Abe, K., Tani, K., Nishizawa, T., Fujiyoshi, Y.

(2009) EMBO J 28: 1637-1643

Released	2009-06-23
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Sus scrofa
Macromolecule	Potassium-transporting ATPase alpha (protein) Potassium-transporting ATPase subunit beta (protein)

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3IYZ \| pdb_00003iyz	Download File View File

Structure of Aquaporin-4 S180D mutant at 10.0 A resolution from electron micrograph

Mitsuma, T., Tani, K., Hiroaki, Y., Kamegawa, A., Suzuki, H., Hibino, H., Kurachi, Y., Fujiyoshi, Y.

(2010) J Mol Biology 402: 669-681

Released	2010-08-25
Method	ELECTRON CRYSTALLOGRAPHY 10 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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3IZ1 \| pdb_00003iz1	Download File View File

C-alpha model fitted into the EM structure of Cx26M34A

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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3IZ2 \| pdb_00003iz2	Download File View File

C-alpha model fitted into the EM structure of Cx26M34Adel2-7

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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3X29 \| pdb_00003x29	Download File View File

CRYSTAL STRUCTURE of MOUSE CLAUDIN-19 IN COMPLEX with C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN

Saitoh, Y., Suzuki, H., Tani, K., Nishikawa, K., Irie, K., Ogura, Y., Tamura, A., Tsukita, S., Fujiyoshi, Y.

(2015) Science 347: 775-778

Released	2015-01-21
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Clostridium perfringens Mus musculus
Macromolecule	Claudin-19 (protein) Heat-labile enterotoxin B chain (protein)

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4BGN \| pdb_00004bgn	Download File View File

cryo-EM structure of the NavCt voltage-gated sodium channel

Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., Mcmillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y., Li, X.D.

(2013) J Mol Biology 425: 4074

Released	2013-07-10
Method	ELECTRON CRYSTALLOGRAPHY 9 Å
Organisms	Caldalkalibacillus thermarum
Macromolecule	VOLTAGE-GATED SODIUM CHANNEL (protein)

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4P79 \| pdb_00004p79	Download File View File

Crystal structure of mouse claudin-15

Suzuki, H., Nishizawa, T., Tani, K., Yamazaki, Y., Tamura, A., Ishitani, R., Dohmae, N., Tsukita, S., Nureki, O., Fujiyoshi, Y.

(2014) Science 344: 304-307

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Claudin-15 (protein)
Unique Ligands	OLC

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4UX1 \| pdb_00004ux1	Download File View File

Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. AlF)

Abe, K., Tani, K., Fujiyoshi, Y.

(2014) J Biological Chem 289: 30590

Released	2014-09-17
Method	ELECTRON CRYSTALLOGRAPHY 8 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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4UX2 \| pdb_00004ux2	Download File View File

Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. MgF)

Abe, K., Tani, K., Fujiyoshi, Y.

(2014) J Biological Chem 289: 30590

Released	2014-09-17
Method	ELECTRON CRYSTALLOGRAPHY 7 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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5GLH \| pdb_00005glh	Download File View File

Human endothelin receptor type-B in complex with ET-1

Shihoya, W., Nishizawa, T., Okuta, A., Tani, K., Fujiyoshi, Y., Dohmae, N., Nureki, O., Doi, T.

(2016) Nature 537: 363-368

Released	2016-09-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Endothelin Receptor Subtype-B (protein) Peptide from Endothelin-1 (protein)

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5GLI \| pdb_00005gli	Download File View File

Human endothelin receptor type-B in the ligand-free form

Shihoya, W., Nishizawa, T., Okuta, A., Tani, K., Fujiyoshi, Y., Dohmae, N., Nureki, O., Doi, T.

(2016) Nature 537: 363-368

Released	2016-09-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Endothelin Receptor Subtype-B (protein)
Unique Ligands	OLA, OLC, SO4

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5H1Q \| pdb_00005h1q	Download File View File

C. elegans INX-6 gap junction hemichannel

Oshima, A., Tani, K., Fujiyoshi, Y.

(2016) Nat Commun 7: 13681-13681

Released	2016-12-07
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Caenorhabditis elegans
Macromolecule	Innexin-6 (protein)

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5H1R \| pdb_00005h1r	Download File View File

C. elegans INX-6 gap junction channel

Oshima, A., Tani, K., Fujiyoshi, Y.

(2016) Nat Commun 7: 13681-13681

Released	2016-12-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Caenorhabditis elegans
Macromolecule	Innexin-6 (protein)

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5X93 \| pdb_00005x93	Download File View File

Human endothelin receptor type-B in complex with antagonist K-8794

Shihoya, W., Nishizawa, T., Yamashita, K., Hirata, K., Okuta, A., Tani, K., Fujiyoshi, Y., Doi, T., Nureki, O.

(2017) Nat Struct Mol Biol 24: 758-764

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Endothelin B receptor,Endolysin,Endothelin B receptor (protein)
Unique Ligands	CLR, K87, OLC, SO4

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5XPR \| pdb_00005xpr	Download File View File

Human endothelin receptor type-B in complex with antagonist bosentan

Shihoya, W., Nishizawa, T., Yamashita, K., Hirata, K., Okuta, A., Tani, K., Fujiyoshi, Y., Doi, T., Nureki, O.

(2017) Nat Struct Mol Biol 24: 758-764

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Endothelin B receptor,Endolysin,Endothelin B receptor (protein)
Unique Ligands	K86, SO4

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5Y0B \| pdb_00005y0b	Download File View File

PIG GASTRIC H+,K+ - ATPASE IN COMPLEX with BYK99

Abe, K., Shimokawa, J., Natio, M., Munson, K., Vagin, O., Sachs, G., Suzuki, H., Tani, K., Fujiyoshi, Y.

(2017) Sci Rep 7: 6632-6632

Released	2017-08-09
Method	ELECTRON CRYSTALLOGRAPHY 6.5 Å
Organisms	Sus scrofa
Macromolecule	Potassium-transporting ATPase alpha chain 1 (protein) Potassium-transporting ATPase subunit beta (protein)

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6ACF \| pdb_00006acf	Download File View File

structure of leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM

Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.

(2019) J Struct Biol 205: 11-21

Released	2018-12-26
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Geobacillus stearothermophilus 10
Macromolecule	Leucine dehydrogenase (protein)

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6ACH \| pdb_00006ach	Download File View File

Structure of NAD+-bound leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM

Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.

(2019) J Struct Biol 205: 11-21

Released	2018-12-26
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Geobacillus stearothermophilus 10
Macromolecule	Leucine dehydrogenase (protein)
Unique Ligands	NAD