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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yan, N."

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Search Summary

This query matches 217 Structures.

Refinements

Structure Determination Methodology

experimental (217)

Scientific Name of Source Organism

	Homo sapiens (113)
	Oryctolagus cuniculus (20)
	Xanthomonas campestris pv. armoraciae (19)
	Sus scrofa (14)
	Arabidopsis thaliana (10)
	Escherichia coli K-12 (7)
	Caenorhabditis elegans (4)
	Drosophila melanogaster (4)
	Halalkalibacterium halodurans C-125 (4)
	Periplaneta americana (4)

More...

Taxonomy

	Eukaryota (173)
	Bacteria (43)
	Eukaryota (eukaryotes) (3)
	unclassified sequences (3)
	Archaea (1)
	Riboviria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (143)
	X-RAY DIFFRACTION (74)

Polymer Entity Type

	Protein (217)
	DNA (21)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (17)
	2.0 - 2.5 (28)
	2.5 - 3.0 (47)
	3.0 - 3.5 (71)
	3.5 - 4.0 (27)
	4.0 - 4.5 (18)
	> 4.5 (9)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (9)
	2010 - 2014 (43)
	2015 - 2019 (63)
	2020 - 2024 (95)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (15)
	Isomerases (16)
	Transferases (9)
	Translocases (2)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (132)
	mpstruc (115)
	MemProtMD (94)
	OPM (92)

Symmetry Type

	Asymmetric (152)
	Cyclic (55)
	Dihedral (11)
	Helical (2)

SCOP Classification

	All alpha proteins (19)
	Artifacts (17)
	Membrane and cell surface proteins and peptides (8)
	Small proteins (3)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)
	Peptides (1)

AllSelected

1 to 25 of 217 Structures

Page 1 of 9

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1OZJ \| pdb_00001ozj	Download File View File

Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution

Chai, J., Wu, J.-W., Yan, N., Massague, J., Pavletich, N.P., Shi, Y.

(2003) J Biological Chem 278: 20327-20331

Released	2004-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	SMAD 3 (protein) Smad binding element (nucleic acid)
Unique Ligands	ZN

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1Q4Q \| pdb_00001q4q	Download File View File

Crystal structure of a DIAP1-Dronc complex

Chai, J., Yan, N., Shi, Y.

(2003) Nat Struct Biol 10: 892-898

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Apoptosis 1 inhibitor (protein) Nedd2-like caspase CG8091-PA (protein)
Unique Ligands	ZN

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1SDZ \| pdb_00001sdz	Download File View File

Crystal structure of DIAP1 BIR1 bound to a Reaper peptide

Yan, N., Wu, J.W., Shi, Y.

(2004) Nat Struct Mol Biol 11: 420-428

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Drosophila melanogaster
Macromolecule	Apoptosis 1 inhibitor (protein) Reaper (protein)
Unique Ligands	ZN

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1SE0 \| pdb_00001se0	Download File View File

Crystal structure of DIAP1 BIR1 bound to a Grim peptide

Yan, N., Wu, J.W., Shi, Y.

(2004) Nat Struct Mol Biol 11: 420-428

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Drosophila melanogaster
Macromolecule	Apoptosis 1 inhibitor (protein) Cell death protein Grim (protein)
Unique Ligands	ZN

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1T29 \| pdb_00001t29	Download File View File

Crystal structure of the BRCA1 BRCT repeats bound to a phosphorylated BACH1 peptide

Shiozaki, E.N., Gu, L., Yan, N., Shi, Y.

(2004) Mol Cell 14: 405-412

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	BACH1 phosphorylated peptide (protein) Breast cancer type 1 susceptibility protein (protein)

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1TY4 \| pdb_00001ty4	Download File View File

Crystal structure of a CED-9/EGL-1 complex

Yan, N., Gu, L., Kokel, D., Xue, D., Shi, Y.

(2004) Mol Cell 15: 999-1006

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Caenorhabditis elegans
Macromolecule	Apoptosis regulator ced-9 (protein) EGg Laying defective EGL-1, programmed cell death activator (protein)

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2A5Y \| pdb_00002a5y	Download File View File

Structure of a CED-4/CED-9 complex

Yan, N., Liu, Q., Hao, Q., Gu, L., Shi, Y.

(2005) Nature 437: 831-837

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Caenorhabditis elegans
Macromolecule	Apoptosis regulator ced-9 (protein) ced-4 (protein)
Unique Ligands	ATP, MG

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2FP3 \| pdb_00002fp3	Download File View File

Crystal structure of the Drosophila initiator caspase Dronc

Yan, N., Gu, L., Shi, Y.

(2006) J Biological Chem 281: 8667-8674

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Caspase Nc (protein)

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2NRF \| pdb_00002nrf	Download File View File

Crystal Structure of GlpG, a Rhomboid family intramembrane protease

Wu, Z., Yan, N., Feng, L., Yan, H., Gu, L., Shi, Y.

(2006) Nat Struct Mol Biol 13: 1084-1091

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Protein GlpG (protein)

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3B4R \| pdb_00003b4r	Download File View File

Site-2 Protease from Methanocaldococcus jannaschii

Jeffrey, P.D., Feng, L., Yan, H., Wu, Z., Yan, N., Wang, Z., Shi, Y.

(2007) Science 318: 1608-1612

Released	2008-01-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Putative zinc metalloprotease MJ0392 (protein)
Unique Ligands	ZN

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3J8H \| pdb_00003j8h	Download File View File

Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution

Yan, Z., Bai, X., Yan, C., Wu, J., Scheres, S.H.W., Shi, Y., Yan, N.

(2015) Nature 517: 50-55

Released	2014-12-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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3JBR \| pdb_00003jbr	Download File View File

Cryo-EM structure of the rabbit voltage-gated calcium channel Cav1.1 complex at 4.2 angstrom

Wu, J.P., Yan, Z., Yan, N.

(2015) Science 350: aad2395-aad2395

Released	2015-12-30
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Oryctolagus cuniculus Rattus norvegicus
Macromolecule	Voltage-dependent L-type calcium channel subunit alpha-1S (protein) Voltage-dependent L-type calcium channel subunit beta-2 (protein) Voltage-dependent calcium channel gamma-1 subunit (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	BMA, CA, NAG

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3JD8 \| pdb_00003jd8	Download File View File

cryo-EM structure of the full-length human NPC1 at 4.4 angstrom

Gong, X., Qian, H.W., Zhou, X.H., Wu, J.P., Zhou, Q., Yan, N.

To be published

Released	2016-06-01
Method	ELECTRON MICROSCOPY 4.43 Å
Organisms	Homo sapiens
Macromolecule	Niemann-Pick C1 protein (protein)
Unique Ligands	CLR, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3KCU \| pdb_00003kcu	Download File View File

Structure of formate channel

Wang, Y., Huang, Y., Wang, J., Yan, N., Shi, Y.

(2009) Nature 462: 467-472

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.243 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Probable formate transporter 1 (protein)
Unique Ligands	MA5

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3KCV \| pdb_00003kcv	Download File View File

Structure of formate channel

Wang, Y., Huang, Y., Wang, J., Yan, N., Shi, Y.

(2009) Nature 462: 467-472

Released	2009-12-01
Method	X-RAY DIFFRACTION 3.198 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Probable formate transporter 1 (protein)

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3KDH \| pdb_00003kdh	Download File View File

Structure of ligand-free PYL2

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative uncharacterized protein At2g26040 (protein)

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3KDI \| pdb_00003kdi	Download File View File

Structure of (+)-ABA bound PYL2

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.379 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative uncharacterized protein At2g26040 (protein)
Unique Ligands	A8S

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3KDJ \| pdb_00003kdj	Download File View File

Complex structure of (+)-ABA-bound PYL1 and ABI1

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.878 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein phosphatase 2C 56 (protein) Putative uncharacterized protein At5g46790 (protein)
Unique Ligands	A8S, MN

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3LQQ \| pdb_00003lqq	Download File View File

Structure of the CED-4 Apoptosome

Qi, S., Pang, Y., Shi, Y., Yan, N., Liu, Q.

(2010) Cell 141: 446-457

Released	2010-04-28
Method	X-RAY DIFFRACTION 3.534 Å
Organisms	Caenorhabditis elegans
Macromolecule	Cell death protein 4 (protein)
Unique Ligands	ATP, MG

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3LQR \| pdb_00003lqr	Download File View File

Structure of CED-4:CED-3 complex

Qi, S., Pang, Y., Shi, Y., Yan, N.

(2010) Cell 141: 446-457

Released	2010-04-28
Method	X-RAY DIFFRACTION 3.896 Å
Organisms	Caenorhabditis elegans
Macromolecule	Cell death protein 4 (protein)
Unique Ligands	ATP, MG

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3NEF \| pdb_00003nef	Download File View File

High-resolution pyrabactin-bound PYL1 structure

Yan, N.

(2010) J Biological Chem 285: 28946-28952

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL1 (protein)
Unique Ligands	PYV

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3NEG \| pdb_00003neg	Download File View File

Pyrabactin-bound PYL1 structure in the open and close forms

Yan, N.

(2010) J Biological Chem 285: 28946-28952

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL1 (protein)
Unique Ligands	BR, PYV