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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhu, Q."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (15)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Bos taurus (3)
	synthetic construct (3)
	Physeter macrocephalus (2)
	Arabidopsis thaliana (1)
	Haplopelma hainanum (1)
	Rhizomucor miehei (1)
	human gammaherpesvirus 4 (1)

Taxonomy

	Eukaryota (20)
	Riboviria (7)
	other sequences (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (22)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (2)
	2005 - 2009 (2)
	2015 - 2019 (5)
	2020 - 2024 (13)

Enzyme Classification Name

	Oxidoreductases (2)
	Hydrolases (1)
	Transferases (1)

Membrane Protein Annotation

	OPM (4)
	PDBTM (3)
	mpstruc (3)
	MemProtMD (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (3)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (2)
	Designed proteins (2)
	Small proteins (1)

AllSelected

1 to 22 of 22 Structures

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1SOC \| pdb_00001soc	Download File View File

NMR STUDY OF THE BACKBONE CONFORMATIONAL EQUILIBRIA OF SANDOSTATIN, MINIMIZED AVERAGE BETA-SHEET STRUCTURE

Melacini, G., Zhu, Q., Goodman, M.

(1997) Biochemistry 36: 1233-1241

Released	1997-04-21
Method	SOLUTION NMR
Macromolecule	SANDOSTATIN (protein)

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2DHS \| pdb_00002dhs	Download File View File

Solution Structure of Nucleic Acid Binding Protein CUGBP1ab and its Binding Study with DNA and RNA

Xia, Y.L., Jun, K.Y., Zhu, Q., Han, X.G., Zhang, H., Timchenko, L., Swanson, M., Gao, X.L.

To be published

Released	2007-04-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CUG triplet repeat RNA-binding protein 1 (protein)

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2JTB \| pdb_00002jtb	Download File View File

Three dimensional solution structure of hainantoxin-III by 2D 1H-NMR

Zhu, Q., Liu, Z., Liang, S.

To be published

Released	2007-08-21
Method	SOLUTION NMR
Organisms	Haplopelma hainanum
Macromolecule	Hainantoxin-3 (protein)

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2SOC \| pdb_00002soc	Download File View File

NMR STUDY OF THE BACKBONE CONFORMATIONAL EQUILIBRIA OF SANDOSTATIN, TWO REPRESENTATIVE MINIMUM ENERGY PARTIALLY HELICAL STRUCTURES

Melacini, G., Zhu, Q., Goodman, M.

(1997) Biochemistry 36: 1233-1241

Released	1997-04-21
Method	SOLUTION NMR
Macromolecule	SANDOSTATIN (protein)

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5VNU \| pdb_00005vnu	Download File View File

Nonheme Iron Replacement in a Biosynthetic Nitric Oxide Reductase Model Performing O2 Reduction to Water: Mn-bound FeBMb

Reed, J., Shi, Y., Zhu, Q., Chakraborty, S., Mirs, E.N., Petrik, I.D., Bhagi-Damodaran, A., Ross, M., Moenne-Loccoz, P., Zhang, Y., Lu, Y.

(2017) J Am Chem Soc 139: 12209-12218

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.584 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, MN

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5VRT \| pdb_00005vrt	Download File View File

Nonheme Iron Replacement in a Biosynthetic Nitric Oxide Reductase Model Performing O2 Reduction to Water: Co-bound FeBMb

Reed, J., Shi, Y., Zhu, Q., Chakraborty, S., Mirs, E.N., Petrik, I.D., Bhagi-Damodaran, A., Ross, M., Moenne-Loccoz, P., Zhang, Y., Lu, Y.

(2017) J Am Chem Soc 139: 12209-12218

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.995 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	CO, HEM

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5WRR \| pdb_00005wrr	Download File View File

Crystal structure of Fam20A

Zhu, Q.

(2017) Elife 6:

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Homo sapiens
Macromolecule	Pseudokinase FAM20A (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5WRS \| pdb_00005wrs	Download File View File

Crystal Structure of Fam20A in complex with ATP

Zhu, Q.

(2017) Elife 6:

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Pseudokinase FAM20A (protein)
Unique Ligands	ATP, NAG
Unique branched monosaccharides	NAG

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5YH3 \| pdb_00005yh3	Download File View File

The structure of hFam20C and hFam20A complex

Zhu, Q., Xiao, J.

(2018) Nat Commun 9: 1218-1218

Released	2018-04-25
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Extracellular serine/threonine protein kinase FAM20C (protein) Pseudokinase FAM20A (protein)
Unique Ligands	ATP

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7BYR \| pdb_00007byr	Download File View File

BD23-Fab in complex with the S ectodomain trimer

Zhu, Q., Wang, G., Xiao, J.

(2020) Cell 182: 73-84.e16

Released	2020-06-10
Method	ELECTRON MICROSCOPY 3.84 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Ab23-Fab-Heavy Chain (protein) Ab23-Fab-Light Chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7CHB \| pdb_00007chb	Download File View File

Crystal structure of the SARS-CoV-2 RBD in complex with BD-236 Fab

Xiao, J., Zhu, Q.

(2020) Cell 183: 1013-1023.e13

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	BD-236 Fab heavy chain (protein) BD-236 Fab light chain (protein) Spike protein S1 (protein)
Unique branched monosaccharides	NAG

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7CHE \| pdb_00007che	Download File View File

Crystal structure of the SARS-CoV-2 RBD in complex with BD-236 Fab and BD-368-2 Fab

Xiao, J., Zhu, Q.

(2020) Cell 183: 1013-1023.e13

Released	2020-09-16
Method	X-RAY DIFFRACTION 3.416 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	BD-236 Fab heavy chain (protein) BD-236 Fab light chain (protein) BD-368-2 Fab heavy chain (protein) BD-368-2 Fab light chain (protein) Spike protein S1 (protein)

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7CHF \| pdb_00007chf	Download File View File

Crystal structure of the SARS-CoV-2 RBD in complex with BD-604 Fab and BD-368-2 Fab

Xiao, J., Zhu, Q.

(2020) Cell 183: 1013-1023.e13

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.674 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	BD-368-2 Fab heavy chain (protein) BD-368-2 Fab light chain (protein) BD-604 Fab heavy chain (protein) BD-604 Fab light chain (protein) Spike protein S1 (protein)

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7CHH \| pdb_00007chh	Download File View File

Cryo-EM structure of the SARS-CoV-2 S-6P in complex with BD-368-2 Fabs

Xiao, J., Zhu, Q., Wang, G.

(2020) Cell 183: 1013-1023.e13

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	BD-368-2 Fab heavy chain (protein) BD-368-2 Fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7D5Z \| pdb_00007d5z	Download File View File

Crystal structure of EBV gH/gL bound with neutralizing antibody 1D8

Zhu, Q., Shan, S., Yu, J., Wang, X., Zhang, L., Zeng, M.

To be published

Released	2021-10-20
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	Envelope glycoprotein H (protein) Envelope glycoprotein L (protein) heavy chain of 1D8 (protein) light chain of 1D8 (protein)

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7FBT \| pdb_00007fbt	Download File View File

Crystal structure of chitinase (RmChi1) from Rhizomucor miehei (sp p32 2 1, MR)

Jiang, Z.Q., Hu, S.Q., Zhu, Q., Liu, Y.C., Ma, J.W., Yan, Q.J., Gao, Y.G., Yang, S.Q.

(2021) Biochim Biophys Acta Proteins Proteom 1869: 140709-140709

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rhizomucor miehei
Macromolecule	Chitinase (protein)
Unique Ligands	MG

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7WQ5 \| pdb_00007wq5	Download File View File

Crystal structure of Arabidopsis transcriptional factor WRINKLED1 with dsDNA

Zhu, Q., Gao, Y.G.

(2022) Sci Adv 8: eabq1211-eabq1211

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Arabidopsis thaliana
Macromolecule	Ethylene-responsive transcription factor WRI1 (protein) DNA (5'-D(PGPTPGPGPAPCPGPAPTPGPAPAPAPCPCPGPAPGPGPAPAPGPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPCPTPTPCPCPTPCPGPGPTPTPTPCPAPTPCPGPTPCPCPAPC)-3') (nucleic acid)
Unique Ligands	NH4

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7YJ4 \| pdb_00007yj4	Download File View File

Cryo-EM structure of the INSL5-bound human relaxin family peptidereceptor 4 (RXFP4)-Gi complex

Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Liu, H., Xu, H.E., Yang, D.H., Wang, M.W.

(2023) Nat Commun 14: 492-492

Released	2023-03-01
Method	ELECTRON MICROSCOPY 3.19 Å
Organisms	Bos taurus Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 7

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7YK6 \| pdb_00007yk6	Download File View File

Cryo-EM structure of the compound 4-bound human relaxin family peptide receptor 4 (RXFP4)-Gi complex

Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Liu, H., Xu, H.E., Yang, D.H., Wang, M.W.

(2023) Nat Commun 14: 492-492

Released	2023-03-01
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Bos taurus Homo sapiens synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-2 (protein) Relaxin-3 receptor 2 (protein) scFv16 (protein)
Unique Ligands	IYF

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7YK7 \| pdb_00007yk7	Download File View File

Cryo-EM structure of the DC591053-bound human relaxin family peptide receptor 4 (RXFP4)-Gi complex

Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Xu, H.E., Yang, D.H., Liu, H., Wang, M.W.

(2023) Nat Commun 14: 492-492

Released	2023-03-01
Method	ELECTRON MICROSCOPY 2.75 Å
Organisms	Bos taurus Homo sapiens synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-2 (protein) Relaxin-3 receptor 2 (protein) scFv16 (protein)
Unique Ligands	IYM

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8Y4A \| pdb_00008y4a	Download File View File

BA.2.86 S-trimer in complex with Nab XG2v046

Zhu, Q., Liu, P.

(2024) Signal Transduct Target Ther 9: 217-217

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) XG2v046 Heavy chain (protein) XG2v046 Light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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8Y4C \| pdb_00008y4c	Download File View File

BA.2.86 S-trimer in complex with Nab XGv280

Zhu, Q., Liu, P.

(2024) Signal Transduct Target Ther 9: 217-217

Released	2024-09-04
Method	ELECTRON MICROSCOPY 3.75 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) XGv280 Heavy chain (protein) XGv280 Light chain (protein)
Unique Ligands	NAG

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1SOC | pdb_00001soc

2DHS | pdb_00002dhs

2JTB | pdb_00002jtb

2SOC | pdb_00002soc

5VNU | pdb_00005vnu

5VRT | pdb_00005vrt

5WRR | pdb_00005wrr

5WRS | pdb_00005wrs

5YH3 | pdb_00005yh3

7BYR | pdb_00007byr

7CHB | pdb_00007chb

7CHE | pdb_00007che

7CHF | pdb_00007chf

7CHH | pdb_00007chh

7D5Z | pdb_00007d5z

7FBT | pdb_00007fbt

7WQ5 | pdb_00007wq5

7YJ4 | pdb_00007yj4

7YK6 | pdb_00007yk6

7YK7 | pdb_00007yk7

8Y4A | pdb_00008y4a

8Y4C | pdb_00008y4c