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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Adachi, S."

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Search Summary

This query matches 96 Structures.

Refinements

Structure Determination Methodology

experimental (96)

Scientific Name of Source Organism

	Physeter macrocephalus (25)
	Fusarium oxysporum (15)
	Homo sapiens (11)
	Nitratidesulfovibrio vulgaris str. 'Miyazaki F (9)
	Mus musculus (7)
	Synechococcus elongatus PCC 6301 (5)
	Halobacterium salinarum (4)
	Pseudomonas putida (4)
	Desulfonema ishimotonii (3)
	Saccharolobus solfataricus (3)

More...

Taxonomy

	Eukaryota (61)
	Bacteria (27)
	Archaea (8)
	other sequences (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (90)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (96)
	DNA (6)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (44)
	1.5 - 2.0 (19)
	2.0 - 2.5 (24)
	2.5 - 3.0 (7)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (60)
	2005 - 2009 (27)
	2010 - 2014 (1)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (58)
	Lyases (7)
	Transferases (2)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (5)
	PDBTM (5)
	OPM (1)

Symmetry Type

	Asymmetric (80)
	Cyclic (18)
	Dihedral (1)

SCOP Classification

	All alpha proteins (68)
	Multi-domain proteins (alpha and beta) (9)
	Alpha and beta proteins (a/b) (6)
	Coiled coil proteins (6)
	Membrane and cell surface proteins and peptides (5)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 96 Structures

Page 1 of 4

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1CL6 \| pdb_00001cl6	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMJ \| pdb_00001cmj	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMN \| pdb_00001cmn	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1D06 \| pdb_00001d06	Download File View File

STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION

Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., Shiro, Y.

(2000) J Mol Biology 301: 415-431

Released	2000-03-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sinorhizobium meliloti
Macromolecule	nitrogen fixation regulatory protein fixL (protein)
Unique Ligands	HEM

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1DZE \| pdb_00001dze	Download File View File

Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K

Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Iizuka, T., Kamiya, N., Adachi, S., Kouyama, T.

(2004) J Mol Biology 341: 1023

Released	2000-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (M INTERMEDIATE) (protein)
Unique Ligands	L1P, L2P, L3P, L4P, RET
Unique branched monosaccharides	GAL, GLC, MAN

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1EHE \| pdb_00001ehe	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EHF \| pdb_00001ehf	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EHG \| pdb_00001ehg	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EUZ \| pdb_00001euz	Download File View File

GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE

Nakasako, M.

(2001) Biochemistry 40: 3069-3079

Released	2001-04-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermococcus profundus
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	SO4

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1EW0 \| pdb_00001ew0	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)

Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., Shiro, Y.

(2000) J Mol Biology 301: 415-431

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sinorhizobium meliloti
Macromolecule	FIXL (protein)
Unique Ligands	HEM

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1F24 \| pdb_00001f24	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F25 \| pdb_00001f25	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F26 \| pdb_00001f26	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1GCV \| pdb_00001gcv	Download File View File

DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-08-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM

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1GCW \| pdb_00001gcw	Download File View File

CO form hemoglobin from mustelus griseus

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	CMO, HEM

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1GEB \| pdb_00001geb	Download File View File

X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM

Hishiki, T., Shimada, H., Nagano, S., Park, S.-Y., Ishimura, Y.

(2000) J Biochem 128: 965-974

Released	2000-11-15
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM

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1GEI \| pdb_00001gei	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1 (protein)
Unique Ligands	HEM, NBN

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1GEJ \| pdb_00001gej	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1 (protein)
Unique Ligands	HEM, NBN

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1GTW \| pdb_00001gtw	Download File View File

crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter

Tahirov, T.H., Ogata, K.

To be published

Released	2004-02-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APAPTPGPTPGPGPCPGPCP* APAPTPCPCPT)-3' (nucleic acid) 5'-D(TPAPGPGPAPTPTPGPCPGP CPCPAPCPAP*T)-3' (nucleic acid)

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1GU4 \| pdb_00001gu4	Download File View File

Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment

Tahirov, T.H., Ogata, K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APAPTPAPTPTPGPCPGPCP* APAPTPCPCPT)-3' (nucleic acid) 5'-D(TPAPGPGPAPTPTPGPCPGP CPAPAPTPAP*T)-3' (nucleic acid)

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1GU5 \| pdb_00001gu5	Download File View File

Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter

Tahirov, T.H., Ogata, K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APTPGPAPTPTPGPGPCPCP* APAPCPAPCPA)-3' (nucleic acid) 5'-D(TPTPGPTPGPTPTPGPGPCP CPAPAPTPCP*A)-3' (nucleic acid)