RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Baardsnes, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Zoarces americanus (18)
	Homo sapiens (7)
	Escherichia coli O157:H7 (2)
	Escherichia coli K-12 (1)

Taxonomy

	Eukaryota (25)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (26)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	> 4.5 (1)

Release Date

	1995 - 1999 (18)
	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

	Lyases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (8)

SCOP Classification

	All beta proteins (24)
	All alpha proteins (1)

AllSelected

1 to 25 of 28 Structures

Page 1 of 2

Sort by

Explore in 3D

1B7I \| pdb_00001b7i	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 K61R

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

1B7J \| pdb_00001b7j	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 V20A

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

1B7K \| pdb_00001b7k	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 R47H

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

1EKL \| pdb_00001ekl	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 E35K

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

1JAB \| pdb_00001jab	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 T18S

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

1MSJ \| pdb_00001msj	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 T15V

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

2AME \| pdb_00002ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 N14Q

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

2I6R \| pdb_00002i6r	Download File View File

Crystal structure of E. coli HypE, a hydrogenase maturation protein

Rangarajan, E.S., Proteau, A., Iannuzzi, P., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2008) J Bacteriol 190: 1447-1458

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Escherichia coli O157:H7
Macromolecule	HypE protein (protein)

Explore in 3D

2JIA \| pdb_00002jia	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 K61I

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

2KQX \| pdb_00002kqx	Download File View File

NMR structure of the J-domain (residues 2-72) in the Escherichia coli CbpA

Ekiel, I.

(2010) J Mol Biology 398: 111-121

Released	2010-04-21
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Curved DNA-binding protein (protein)

Explore in 3D

2MSJ \| pdb_00002msj	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 N46S

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

2RB9 \| pdb_00002rb9	Download File View File

Crystal structure of E.coli HypE

Asinas, A.E., Rangarajan, E.S., Min, T., Matte, A., Proteau, A., Munger, C., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2008) J Bacteriol 190: 1447-1458

Released	2007-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	HypE protein (protein)

Explore in 3D

2SPG \| pdb_00002spg	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 T15S

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

3AME \| pdb_00003ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 Q9TQ44T

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

4AME \| pdb_00004ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 T18A

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

4BSV \| pdb_00004bsv	Download File View File

Heterodimeric Fc Antibody Azymetric Variant 1

Suits, M.D.L., Spreter, T., Cabrera, E.E., Dixit, S.B., Lario, P.I., Poon, D.K.Y., D'Angelo, I.E.P., Boulanger, M.J.

(2013) MAbs 5: 646

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	HETERODIMERIC FC ANTIBODY AZYMETRIC VARIANT 2 (protein)
Unique Ligands	EDO, IOD
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

Explore in 3D

4BSW \| pdb_00004bsw	Download File View File

Heterodimeric Fc Antibody Azymetric Variant 2

Suits, M.D.L., Spreter, T., Cabrera, E.E., Dixit, S.B., Lario, P.I., Poon, D.K.Y., D'Angelo, I.E.P., Boulanger, M.J.

(2013) MAbs 5: 646

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	HETERODIMERIC FC ANTIBODY AZYMETRIC VARIANT 2 (protein)
Unique Ligands	EDO, IOD
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

Explore in 3D

6AME \| pdb_00006ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 M21A

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

6MXR \| pdb_00006mxr	Download File View File

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M]

Shi, R.

(2019) MAbs 11: 1300-1318

Released	2019-07-31
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	anti-VEGF-A Fab fragment bH1 heavy chain (protein) anti-VEGF-A Fab fragment bH1 light chain (protein)
Unique Ligands	CL, EDO, NA

Explore in 3D

6MXS \| pdb_00006mxs	Download File View File

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M]

Shi, R., Picard, M.-E., Manenda, M.S.

(2019) MAbs 11: 1300-1318

Released	2019-07-31
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	anti-VEGF-A Fab fragment bH1 heavy chain (protein) anti-VEGF-A Fab fragment bH1 light chain (protein)
Unique Ligands	CL, EDO, NA

Explore in 3D

6MY4 \| pdb_00006my4	Download File View File

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M,LC-S30bR]

Shi, R., Picard, M.-E., Manenda, M.

(2019) MAbs 11: 1300-1318

Released	2019-07-31
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	anti-VEGF-A Fab fragment bH1 heavy chain (protein) anti-VEGF-A Fab fragment bH1 light chain (protein)
Unique Ligands	EDO

Explore in 3D

6MY5 \| pdb_00006my5	Download File View File

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M,LC-S30bR]

Shi, R.

(2019) MAbs 11: 1300-1318

Released	2019-07-31
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	anti-VEGF-A Fab fragment bH1 heavy chain (protein) anti-VEGF-A Fab fragment bH1 light chain (protein)
Unique Ligands	EDO

Explore in 3D

7AME \| pdb_00007ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 T15A

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

8AME \| pdb_00008ame	Download File View File

TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 N14SA16H

Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.

(1999) J Biological Chem 274: 11842-11847

Released	1999-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zoarces americanus
Macromolecule	PROTEIN (ANTIFREEZE PROTEIN TYPE III) (protein)

Explore in 3D

8FFJ \| pdb_00008ffj	Download File View File

Structure of Zanidatamab bound to HER2

Worrall, L.J., Atkinson, C.E., Sanches, M., Dixit, S., Strynadka, N.C.J.

(2023) Nat Commun 14: 1394-1394

Released	2023-02-22
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Homo sapiens
Macromolecule	Receptor tyrosine-protein kinase erbB-2 (protein) Zanidatamab Heavy Chain A (protein) Zanidatamab Heavy Chain B (protein) Zanidatamab Light Chain A (protein)

1 to 25 of 28 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B7I | pdb_00001b7i

1B7J | pdb_00001b7j

1B7K | pdb_00001b7k

1EKL | pdb_00001ekl

1JAB | pdb_00001jab

1MSJ | pdb_00001msj

2AME | pdb_00002ame

2I6R | pdb_00002i6r

2JIA | pdb_00002jia

2KQX | pdb_00002kqx

2MSJ | pdb_00002msj

2RB9 | pdb_00002rb9

2SPG | pdb_00002spg

3AME | pdb_00003ame

4AME | pdb_00004ame

4BSV | pdb_00004bsv

4BSW | pdb_00004bsw

6AME | pdb_00006ame

6MXR | pdb_00006mxr

6MXS | pdb_00006mxs

6MY4 | pdb_00006my4

6MY5 | pdb_00006my5

7AME | pdb_00007ame

8AME | pdb_00008ame

8FFJ | pdb_00008ffj