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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Caly, D.L."

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Persephonella marina EX-H1 (3)
	Helicobacter pylori NCTC 11638 (1)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

2010 - 2014 (4)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (3)
	Asymmetric (1)

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3NA7 \| pdb_00003na7	Download File View File

2.2 Angstrom Structure of the HP0958 Protein from Helicobacter pylori CCUG 17874

Caly, D.L., O'Toole, P.W., Moore, S.A.

(2010) J Mol Biology 403: 405-419

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori NCTC 11638
Macromolecule	HP0958 (protein)
Unique Ligands	EPE, MG, ZN

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4MCW \| pdb_00004mcw	Download File View File

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)

(2014) Mol Microbiol 91: 26-38

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Persephonella marina EX-H1
Macromolecule	Metal dependent phosphohydrolase (protein)
Unique Ligands	EDO, FE, IMD, SIN

Explore in 3D

4MDZ \| pdb_00004mdz	Download File View File

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)

(2014) Mol Microbiol 91: 26-38

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Persephonella marina EX-H1
Macromolecule	Metal dependent phosphohydrolase (protein)
Unique Ligands	C2E, FE, SIN

Explore in 3D

4ME4 \| pdb_00004me4	Download File View File

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)

(2014) Mol Microbiol 91: 26-38

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Persephonella marina EX-H1
Macromolecule	Metal dependent phosphohydrolase (protein)
Unique Ligands	5GP, FE, IMD, SIN

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3NA7 | pdb_00003na7

2.2 Angstrom Structure of the HP0958 Protein from Helicobacter pylori CCUG 17874

4MCW | pdb_00004mcw

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

4MDZ | pdb_00004mdz

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

4ME4 | pdb_00004me4

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3NA7 | pdb_00003na7

2.2 Angstrom Structure of the HP0958 Protein from Helicobacter pylori CCUG 17874

4MCW | pdb_00004mcw

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

4MDZ | pdb_00004mdz

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

4ME4 | pdb_00004me4

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre