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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Costa, M."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (14)
	Human immunodeficiency virus 1 (3)
	Mycolicibacterium hassiacum DSM 44199 (3)
	Mycolicibacterium hassiacum (2)
	Oceanobacillus iheyensis (2)
	Antirrhinum majus (1)
	Didymium iridis (1)
	Mus musculus (1)
	Streptococcus agalactiae (1)

Taxonomy

	Eukaryota (17)
	Bacteria (8)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (24)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (22)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (9)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (4)
	2015 - 2019 (12)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (6)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (8)

SCOP Classification

	All beta proteins (7)
	All alpha proteins (3)
	Artifacts (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 25 Structures

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1EA4 \| pdb_00001ea4	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Gomis-Rueth, F.X., Costa, M., Sola, M., Acebo, P., Eritja, R., Espinosa, M., Solar, G.D., Coll, M.

(2001) J Mol Biology 310: 403

Released	2001-07-05
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(TPAPAPCPCPGPTPGP CPAPCPTPCPAPAPTPGPCPAPAPTPC)-3') (nucleic acid) DNA(5'-D(APGPAPTPTPGPCPAPTP TPGPAPGPTPGPCPAPCPGPGPTPT)-3') (nucleic acid)

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2CJJ \| pdb_00002cjj	Download File View File

Crystal Structure of the MYB domain of the RAD transcription factor from Antirrhinum majus

Stevenson, C.E.M., Burton, N., Costa, M.M., Nath, U., Dixon, R.A., Coen, E.S., Lawson, D.M.

(2006) Proteins 65: 1041

Released	2006-10-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Antirrhinum majus
Macromolecule	RADIALIS (protein)

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3CBX \| pdb_00003cbx	Download File View File

The Dvl2 PDZ Domain in Complex with the C1 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	CL, MPD

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3CBY \| pdb_00003cby	Download File View File

The Dvl2 PDZ Domain in Complex with the N1 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	EDO

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3CBZ \| pdb_00003cbz	Download File View File

The Dvl2 PDZ Domain in Complex with the N2 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	EDO, PO4

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3CC0 \| pdb_00003cc0	Download File View File

The Dvl2 PDZ Domain in Complex with the N3 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)

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3O76 \| pdb_00003o76	Download File View File

1.8 Angstroms molecular structure of mouse liver glutathione S-transferase mutant C47A complexed with S-(P-nitrobenzyl)glutathione

Canals, A., Coll, M.

(2011) FEBS J 278: 273-281

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Mus musculus
Macromolecule	Glutathione S-transferase P 1 (protein)
Unique Ligands	GTB

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3SOB \| pdb_00003sob	Download File View File

The structure of the first YWTD beta propeller domain of LRP6 in complex with a FAB

Wang, W., Bourhis, E., Tam, C., Zhang, Y., Rouge, L., Wu, Y., Franke, Y., Cochran, A.G.

(2011) Structure 19: 1433-1442

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Low-density lipoprotein receptor-related protein 6 (protein) antibody heavy chain (protein) antibody light chain (protein)
Unique Ligands	CA

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3SOQ \| pdb_00003soq	Download File View File

The structure of the first YWTD beta propeller domain of LRP6 in complex with a DKK1 peptide

Wang, W., Bourhis, E., Zhang, Y., Rouge, L., Wu, Y., Franke, Y., Cochran, A.G.

(2011) Structure 19: 1433-1442

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Dickkopf-related protein 1 (protein) Low-density lipoprotein receptor-related protein 6 (protein)
Unique Ligands	CA, FUC, GOL, NAG

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3SOV \| pdb_00003sov	Download File View File

The structure of a beta propeller domain in complex with peptide S

Wang, W., Bourhis, E., Zhang, Y., Rouge, L., Wu, Y., Franke, Y., Cochran, A.G.

(2011) Structure 19: 1433-1442

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Low-density lipoprotein receptor-related protein 6 (protein) Sclerostin (protein)
Unique Ligands	FUC, GOL, NAG

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5CEH \| pdb_00005ceh	Download File View File

Structure of histone lysine demethylase KDM5A in complex with selective inhibitor

Kiefer, J.R., Vinogradova, M.

(2016) Nat Chem Biol 12: 531-538

Released	2016-05-18
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein) Unknown Peptide (protein)
Unique Ligands	50P, NI, ZN

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5J01 \| pdb_00005j01	Download File View File

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Costa, M., Walbott, H., Monachello, D., Westhof, E., Michel, F.

(2016) Science 354:

Released	2016-12-14
Method	X-RAY DIFFRACTION 3.39 Å
Organisms	Oceanobacillus iheyensis
Macromolecule	group II intron lariat (nucleic acid)
Unique Ligands	MG, NH4

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5J02 \| pdb_00005j02	Download File View File

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.

Costa, M., Walbott, H., Monachello, D., Westhof, E., Michel, F.

(2016) Science 354:

Released	2016-12-14
Method	X-RAY DIFFRACTION 3.493 Å
Organisms	Oceanobacillus iheyensis
Macromolecule	5' EXON ANALOG (5'-R(CPUPGPUPUPAP*(5MU))-3') (nucleic acid) GROUP II INTRON LARIAT (nucleic acid)
Unique Ligands	MG, NH4

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5V7R \| pdb_00005v7r	Download File View File

Cyrstal structure of anti-Tau antibody CBTAU-7.1 Fab

Zhu, X., Zhang, H., Wilson, I.A.

(2017) Acta Neuropathol 133: 767-783

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CBTAU-7.1 Fab heavy chain (protein) CBTAU-7.1 Fab light chain (protein)

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5V7U \| pdb_00005v7u	Download File View File

Cyrstal structure of anti-Tau antibody CBTAU-22.1 Fab

Zhu, X., Zhang, H., Wilson, I.A.

(2017) Acta Neuropathol 133: 767-783

Released	2017-04-12
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	CBTAU-22.1 Fab heavy chain (protein) CBTAU-22.1 Fab light chain (protein)
Unique Ligands	SO4

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6DB5 \| pdb_00006db5	Download File View File

Crystal structure of anti-HIV-1 V3 Fab TA6 in complex with a HIV-1 gp120 V3 peptide from NY5 strain

Chan, K.-W., Kong, X.-P.

(2018) J Virol 92:

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.599 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV-1 gp120 V3 peptide from NY5 strain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab heavy chain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab light chain (protein)

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6DB6 \| pdb_00006db6	Download File View File

Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain

Chan, K.-W., Kong, X.-P.

(2018) J Virol 92:

Released	2018-07-11
Method	X-RAY DIFFRACTION 1.978 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV-1 gp120 V3 peptide from MN strain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain (protein)
Unique branched monosaccharides	BMA, FCA, MAN, NAG

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6DB7 \| pdb_00006db7	Download File View File

Crystal structure of anti-HIV-1 V3 Fab 1334 in complex with a HIV-1 gp120 V3 peptide from MN strain

Chan, K.-W., Kong, X.-P.

(2018) J Virol 92:

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.213 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV-1 gp120 V3 peptide from MN strain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 1334 Fab heavy chain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 1334 Fab light chain (protein)
Unique Ligands	GOL

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6G7D \| pdb_00006g7d	Download File View File

Structure of MeT1 from Mycobacterium hassiacum in complex with SAM and glycerol.

Pereira, P.J.B., Ripoll-Rozada, J.

(2019) Proc Natl Acad Sci U S A 116: 835-844

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Mycolicibacterium hassiacum DSM 44199
Macromolecule	Methyltransferase domain protein (protein)
Unique Ligands	CL, GOL, MG, SAH

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6G7Z \| pdb_00006g7z	Download File View File

Lariat-capping ribozyme with a shortened DP2 stem loop

Masquida, B., Meyer, M., Olieric, V.

(2019) RNA 25: 1522-1531

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.33594999571 Å
Organisms	Didymium iridis
Macromolecule	Lariat-capping ribozyme (nucleic acid)
Unique Ligands	MES, MG

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6G80 \| pdb_00006g80	Download File View File

Structure of Mycobacterium hassiacum MeT1 from orthorhombic crystals.

Pereira, P.J.B., Ripoll-Rozada, J.

(2019) Proc Natl Acad Sci U S A 116: 835-844

Released	2019-01-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycolicibacterium hassiacum DSM 44199
Macromolecule	Methyltransferase domain protein (protein)
Unique Ligands	GOL, SAH

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6H40 \| pdb_00006h40	Download File View File

High resolution structure of MeT1 from Mycobacterium hassiacum in complex with 3-methoxy-1,2-propanediol.

Pereira, P.J.B., Ripoll-Rozada, J.

(2019) Proc Natl Acad Sci U S A 116: 835-844

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.053 Å
Organisms	Mycolicibacterium hassiacum DSM 44199
Macromolecule	Methyltransferase domain protein (protein)
Unique Ligands	CL, FW5, GOL, MG, SAH

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7QSG \| pdb_00007qsg	Download File View File

Methylmannose polysaccharide mannosyltransferase from M. hassiacum

Manso, J.A., Ripoll-Rozada, J., Pereira, P.J.B.

(2023) Commun Biol 6: 108-108

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mycolicibacterium hassiacum
Macromolecule	D-inositol 3-phosphate glycosyltransferase (protein)

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7QSJ \| pdb_00007qsj	Download File View File

Methylmannose polysaccharide hydrolase MmpH from M. hassiacum

Ripoll-Rozada, J., Manso, J.A., Pereira, P.J.B.

(2023) Commun Biol 6: 108-108

Released	2023-01-25
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Mycolicibacterium hassiacum
Macromolecule	Methylmannose polysaccharide hydrolase (MmpH) (protein)
Unique Ligands	GOL, MG, NI