RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Davidson, I.F."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (8)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Rattus norvegicus (1)
	Saccharomyces cerevisiae (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (8)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	> 4.5 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

Transferases (2)

Symmetry Type

	Asymmetric (7)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

Page 1 of 1

Sort by

Explore in 3D

2MT5 \| pdb_00002mt5	Download File View File

Isolated Ring domain

Brown, N.G., Watson, E.R., Weissman, F., Royappa, G., Schulman, B., Jarvis, M., Vanderlinden, R., Frye, J.J., Qiao, R., Petzold, G., Peters, J., Stark, H.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

Explore in 3D

4R2Y \| pdb_00004r2y	Download File View File

Crystal structure of APC11 RING domain

Brown, N.G., Watson, E.R., Weissmann, F., Jarvis, M.A., Vanderlinden, R., Grace, C.R.R., Frye, J.J., Dube, P., Qiao, R., Petzold, G., Cho, S.E., Alsharif, O., Bao, J., Zheng, J., Nourse, A., Kurinov, I., Peters, J.M., Stark, H., Schulman, B.A.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

Explore in 3D

5JG6 \| pdb_00005jg6	Download File View File

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C

Brown, N.G., Zhang, W., Yu, S., Miller, D.J., Sidhu, S.S., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.0013 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein) Polyubiquitin-B (protein)
Unique Ligands	ZN

Explore in 3D

5L9T \| pdb_00005l9t	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-10-26
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 17

Explore in 3D

5L9U \| pdb_00005l9u	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-09-14
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Rattus norvegicus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 17

Explore in 3D

6NXK \| pdb_00006nxk	Download File View File

Ubiquitin binding variants

Miller, D.J., Watson, E.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 2 (protein) Polyubiquitin-C (protein)

Explore in 3D

6NXL \| pdb_00006nxl	Download File View File

Ubiquitin binding variants

Miller, D.J., Watson, E.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein)

Explore in 3D

6OB1 \| pdb_00006ob1	Download File View File

Structure of WHB in complex with Ubiquitin Variant

Edmond, R.W., Grace, C.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2019-08-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 2 (protein) Ubiquitin (protein)

Explore in 3D

6SDK \| pdb_00006sdk	Download File View File

Crystal structure of bacterial ParB dimer bound to CDP

Soh, Y.M., Basquin, J., Gruber, S.

(2019) Science 366: 1129-1133

Released	2019-10-23
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Stage 0 sporulation protein J (protein)
Unique Ligands	CA, CDP

1 to 9 of 9 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2MT5 | pdb_00002mt5

Isolated Ring domain

4R2Y | pdb_00004r2y

Crystal structure of APC11 RING domain

5JG6 | pdb_00005jg6

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C

5L9T | pdb_00005l9t

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

5L9U | pdb_00005l9u

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

6NXK | pdb_00006nxk

Ubiquitin binding variants

6NXL | pdb_00006nxl

Ubiquitin binding variants

6OB1 | pdb_00006ob1

Structure of WHB in complex with Ubiquitin Variant

6SDK | pdb_00006sdk

Crystal structure of bacterial ParB dimer bound to CDP

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2MT5 | pdb_00002mt5

4R2Y | pdb_00004r2y

5JG6 | pdb_00005jg6

5L9T | pdb_00005l9t

5L9U | pdb_00005l9u

6NXK | pdb_00006nxk

6NXL | pdb_00006nxl

6OB1 | pdb_00006ob1

6SDK | pdb_00006sdk