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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Domingues, M.N."

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Xanthomonas citri pv. citri str. 306 (9)
	Amycolatopsis mediterranei (7)
	Lentinula edodes (5)
	Bifidobacterium longum (4)
	Aureobasidium namibiae CBS 147.97 (3)
	Blastomyces gilchristii (3)
	Bacillus licheniformis DSM 13 = ATCC 14580 (2)
	Citrus sinensis (2)
	Cryptococcus neoformans (2)
	Pseudomonas viridiflava (2)

More...

Taxonomy

	Bacteria (25)
	Eukaryota (17)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (39)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (44)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (26)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (7)
	2020 - 2024 (35)

Enzyme Classification Name

Isomerases (1)

Symmetry Type

	Asymmetric (34)
	Cyclic (6)
	Dihedral (4)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 25 of 44 Structures

Page 1 of 2

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2M70 \| pdb_00002m70	Download File View File

Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1

Sforca, M.L., Domingues, M.N., Zeri, A.C.M., Benedetti, C.E.

To be published

Released	2014-04-16
Method	SOLUTION NMR
Organisms	Citrus sinensis
Macromolecule	Poly(A)-binding protein 1 (protein)

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4JJM \| pdb_00004jjm	Download File View File

Structure of a cyclophilin from Citrus sinensis (CsCyp) in complex with cyclosporin A

Campos, B.M., Ambrosio, A.L.B., Souza, T.A.C.B., Barbosa, J.A.R.G., Benedetti, C.E.

(2013) Plant Physiol 162: 1311-1323

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Citrus sinensis Tolypocladium inflatum
Macromolecule	Peptidyl-prolyl cis-trans isomerase (protein) cyclosporin A (protein)

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6BYC \| pdb_00006byc	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, GOL, PEG

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6BYE \| pdb_00006bye	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.126 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, BMA

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6BYG \| pdb_00006byg	Download File View File

Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

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6BYI \| pdb_00006byi	Download File View File

Crystal structure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

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6D25 \| pdb_00006d25	Download File View File

Crystal structure of the GH51 arabinofuranosidase from Xanthomonas axonopodis pv. citri

Santos, C.R., Morais, M.A.B., Tonoli, C.C.C., Giuseppe, P.O., Murakami, M.T.

(2018) Biotechnol Biofuels 11: 223-223

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Alpha-L-arabinosidase (protein)
Unique Ligands	GOL

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6MS2 \| pdb_00006ms2	Download File View File

Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis

Zanphorlin, L.M., Morais, M.A.B., Diogo, J.A., Murakami, M.T.

(2019) Biotechnol Bioeng 116: 734-744

Released	2019-04-17
Method	X-RAY DIFFRACTION 2.494 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 43 (protein)
Unique Ligands	CA

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6MS3 \| pdb_00006ms3	Download File View File

Crystal structure of the GH43 protein BlXynB mutant (K247S) from Bacillus licheniformis

Zanphorlin, L.M., Morais, M.A.B., Diogo, J.A., Murakami, M.T.

(2019) Biotechnol Bioeng 116: 734-744

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 43 (protein)
Unique Ligands	CA, GOL, IMD, SO4

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6UAQ \| pdb_00006uaq	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase from Amycolatopsis mediterranei (AmGH128_I)

Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL, NA

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6UAR \| pdb_00006uar	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaritriose

Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC

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6UAS \| pdb_00006uas	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E199A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glycoside Hydrolase (protein)
Unique Ligands	BGC, PEG, ZN
Unique branched monosaccharides	BGC, GLC

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6UAT \| pdb_00006uat	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	ZN
Unique branched monosaccharides	BGC

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6UAU \| pdb_00006uau	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaritriose and laminaribiose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	PEG, ZN
Unique branched monosaccharides	BGC

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6UAV \| pdb_00006uav	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Pseudomonas viridiflava (PvGH128_II)

Santos, C.R., Costa, P.A.C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas viridiflava
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL, SO4

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6UAW \| pdb_00006uaw	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Pseudomonas viridiflava (PvGH128_II) in complex with laminaritriose

Santos, C.R., Costa, P.A.C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas viridiflava
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC

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6UAX \| pdb_00006uax	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Sorangium cellulosum (ScGH128_II)

Santos, C.R., Costa, P.A.C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Sorangium cellulosum So ce56
Macromolecule	Hypothetical serine rich protein (protein)
Unique Ligands	CA, CL, EPE, TRS

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6UAY \| pdb_00006uay	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III)

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Blastomyces gilchristii
Macromolecule	GLYCOSIDE HYDROLASE (protein)

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6UAZ \| pdb_00006uaz	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with glucose

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Blastomyces gilchristii
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	BGC

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6UB0 \| pdb_00006ub0	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with laminaribiose at -2 and -1 subsites

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Blastomyces gilchristii SLH14081
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC, GLC

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6UB1 \| pdb_00006ub1	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with laminaribiose at -3 and -2 subsites

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Blastomyces gilchristii
Macromolecule	GLYCOSIDE HYDROLASE (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC

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6UB2 \| pdb_00006ub2	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV)

Santos, C.R., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL, MES, SO4

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6UB3 \| pdb_00006ub3	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) with laminaribiose at the surface-binding site

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lentinula edodes
Macromolecule	glycoside hydrolase (protein)
Unique Ligands	CL, MES, SO4
Unique branched monosaccharides	BGC

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6UB4 \| pdb_00006ub4	Download File View File

Crystal structure (C2 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritriose

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Lentinula edodes
Macromolecule	GLYCOSIDE HYDROLASE (protein)
Unique Ligands	CL, MES
Unique branched monosaccharides	BGC

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6UB5 \| pdb_00006ub5	Download File View File

Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritriose

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL
Unique branched monosaccharides	BGC

1 to 25 of 44 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2M70 | pdb_00002m70

4JJM | pdb_00004jjm

6BYC | pdb_00006byc

6BYE | pdb_00006bye

6BYG | pdb_00006byg

6BYI | pdb_00006byi

6D25 | pdb_00006d25

6MS2 | pdb_00006ms2

6MS3 | pdb_00006ms3

6UAQ | pdb_00006uaq

6UAR | pdb_00006uar

6UAS | pdb_00006uas

6UAT | pdb_00006uat

6UAU | pdb_00006uau

6UAV | pdb_00006uav

6UAW | pdb_00006uaw

6UAX | pdb_00006uax

6UAY | pdb_00006uay

6UAZ | pdb_00006uaz

6UB0 | pdb_00006ub0

6UB1 | pdb_00006ub1

6UB2 | pdb_00006ub2

6UB3 | pdb_00006ub3

6UB4 | pdb_00006ub4

6UB5 | pdb_00006ub5