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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Doucleff, M."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Aquifex aeolicus (9)
	Aquifex aeolicus VF5 (3)
	Escherichia coli (1)

Taxonomy

Bacteria (13)

Experimental Method

	X-RAY DIFFRACTION (7)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (13)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (10)
	2010 - 2014 (3)

Symmetry Type

	Cyclic (7)
	Asymmetric (6)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 13 of 13 Structures

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1ZDM \| pdb_00001zdm	Download File View File

Crystal Structure of Activated CheY Bound to Xe

Lowery, T.J., Doucleff, M., Ruiz, E.J., Rubin, S.M., Pines, A., Wemmer, D.E.

(2005) Protein Sci 14: 848-855

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	MN, XE

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1ZY2 \| pdb_00001zy2	Download File View File

Crystal structure of the phosphorylated receiver domain of the transcription regulator NtrC1 from Aquifex aeolicus

Doucleff, M., Chen, B., Maris, A.E., Wemmer, D.E., Kondrashkina, E., Nixon, B.T.

(2005) J Mol Biology 353: 242-255

Released	2005-08-16
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Aquifex aeolicus
Macromolecule	transcriptional regulator NtrC1 (protein)
Unique Ligands	MG

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2AHQ \| pdb_00002ahq	Download File View File

Solution Structure of the C-terminal RpoN Domain of Sigma-54 from Aquifex aeolicus

Doucleff, M., Malak, L.T., Pelton, J.G., Wemmer, D.E.

(2005) J Biological Chem 280: 41530-41536

Released	2005-10-11
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RNA polymerase sigma factor RpoN (protein)

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2JRL \| pdb_00002jrl	Download File View File

Solution structure of the beryllofluoride-activated NtrC4 receiver domain dimer

Lee, C., Hong, E., Doucleff, M., Pelton, J.G., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2008-07-01
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)

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2K9L \| pdb_00002k9l	Download File View File

Structure of the Core Binding Domain of sigma54

Hong, E., Wemmer, D.

(2009) J Mol Biology 390: 70-82

Released	2009-05-26
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RNA polymerase sigma factor RpoN (protein)

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2K9M \| pdb_00002k9m	Download File View File

Structure of the Core Binding Domain of sigma54

Hong, E., Wemmer, D.

(2009) J Mol Biology 390: 70-82

Released	2009-05-26
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RNA polymerase sigma factor RpoN (protein)

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2O8K \| pdb_00002o8k	Download File View File

NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element

Doucleff, M., Pelton, J.G., Lee, P.S., Wemmer, D.E.

(2007) J Mol Biology 369: 1070-1078

Released	2007-07-17
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RNA polymerase sigma factor RpoN (protein) 5'-D(GPAPAPAPCPGPTPGPCPCPAPAPAPA)-3' (nucleic acid) 5'-D(TPTPTPTPGPGPCPAPCPGPTPTPTPC)-3' (nucleic acid)

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2O9L \| pdb_00002o9l	Download File View File

AMBER refined NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element

Doucleff, M., Pelton, J.G., Lee, P.S., Wemmer, D.E.

(2007) J Mol Biology 369: 1070-1078

Released	2007-07-17
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RNA polymerase sigma factor RpoN (protein) 5'-D(GPAPAPAPCPGPTPGPCPCPAPAPAPA)-3' (nucleic acid) 5'-D(TPTPTPTPGPGPCPAPCPGPTPTPTPC)-3' (nucleic acid)

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3DZD \| pdb_00003dzd	Download File View File

Crystal structure of sigma54 activator NTRC4 in the inactive state

Batchelor, J.D., Doucleff, M., Lee, C.-J., Matsubara, K., De Carlo, S., Heideker, J., Lamers, M.M., Pelton, J.G., Wemmer, D.E.

(2008) J Mol Biology 384: 1058-1075

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	ADP, NA

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3E7L \| pdb_00003e7l	Download File View File

Crystal structure of sigma54 activator NtrC4's DNA binding domain

Batchelor, J.D., Doucleff, M., Lee, C.-J., Matsubara, K., De Carlo, S., Heideker, J., Lamers, M.M., Pelton, J.G., Wemmer, D.E.

(2008) J Mol Biology 384: 1058-1075

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.252 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	ZN