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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ferreira, L.M.A."

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Acetivibrio thermocellus (17)
	Cellvibrio mixtus (11)
	Ruminococcus flavefaciens FD-1 (9)
	Ruminococcus flavefaciens (5)
	Acetivibrio cellulolyticus (4)
	[Eubacterium] cellulosolvens (4)
	Halalkalibacterium halodurans (3)
	Pseudobacteroides cellulosolvens (1)
	Streptomyces lividans (1)

Taxonomy

Bacteria (55)

Experimental Method

X-RAY DIFFRACTION (55)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (22)
	2.0 - 2.5 (18)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (18)
	2005 - 2009 (11)
	2010 - 2014 (3)
	2015 - 2019 (22)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (22)

Symmetry Type

	Asymmetric (45)
	Cyclic (10)

SCOP Classification

	All beta proteins (23)
	Artifacts (15)
	Alpha and beta proteins (a/b) (9)
	All alpha proteins (6)

AllSelected

1 to 25 of 55 Structures

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1DYO \| pdb_00001dyo	Download File View File

Xylan-Binding Domain from CBM 22, formally x6b domain

Davies, G.J., Charnock, S.J., Gilbert, H.J., Fontes, C.M.G.A.

(2000) Biochemistry 39: 5013

Released	2000-07-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1GKK \| pdb_00001gkk	Download File View File

Feruloyl esterase domain of XynY from clostridium thermocellum

Prates, J.A.M., Tarbouriech, N., Charnock, S.J., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J.

(2001) Structure 9: 1183

Released	2001-12-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CD, GOL

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1GMM \| pdb_00001gmm	Download File View File

Carbohydrate binding module CBM6 from xylanase U Clostridium thermocellum

Czjzek, M., Mosbah, A., Bolam, D., Allouch, J., Zamboni, V., Henrissat, B., Gilbert, H.J.

(2001) J Biological Chem 276: 48580

Released	2001-11-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CBM6 (protein)
Unique Ligands	CA, NA, SO4

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1H6X \| pdb_00001h6x	Download File View File

The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding module of Clostridium thermocellum Xyn10B in ligand binding

Xie, H., Bolam, D.N., Charnock, S.J., Davies, G.J., Williamson, M.P., Simpson, P.J., Fontes, C.M.G.A., Ferreira, L.M.A., Gilbert, H.J.

(2001) Biochemistry 40: 9167

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1H6Y \| pdb_00001h6y	Download File View File

The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding module of Clostridium thermocellum Xyn10B in ligand binding

Xie, H., Bolam, D.N., Charnock, S.J., Davies, G.J., Williamson, M.P., Simpson, P.J., Fontes, C.M.G.A., Ferreira, L.M.A., Gilbert, H.J.

(2001) Biochemistry 40: 9167

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1OHZ \| pdb_00001ohz	Download File View File

Cohesin-Dockerin complex from the cellulosome of Clostridium thermocellum

Carvalho, A.L., Dias, F.M.V., Prates, J.A.M., Ferreira, L.M.A., Gilbert, H.J., Davies, G.J., Romao, M.J., Fontes, C.M.G.A.

(2003) Proc Natl Acad Sci U S A 100: 13809

Released	2003-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CELLULOSOMAL SCAFFOLDING PROTEIN A (protein) ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA, CL, EDO, NO3

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1UQY \| pdb_00001uqy	Download File View File

Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with xylopentaose

Pell, G., Taylor, E.J., Gloster, T.M., Turkenburg, J.P., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 9597

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Cellvibrio mixtus
Macromolecule	ENDOXYLANASE (protein)
Unique Ligands	MG
Unique branched monosaccharides	XYP, XYS

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1UQZ \| pdb_00001uqz	Download File View File

Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with 4-O-methyl glucuronic acid

Pell, G., Taylor, E.J., Gloster, T.M., Turkenburg, J.P., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 9597

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Cellvibrio mixtus
Macromolecule	ENDOXYLANASE (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	GCV, XYP, XYS

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1UR1 \| pdb_00001ur1	Download File View File

Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with arabinofuranose alpha-1,3 linked to xylobiose

Pell, G., Taylor, E.J., Gloster, T.M., Turkenburg, J.P., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 9597

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Cellvibrio mixtus
Macromolecule	ENDOXYLANASE (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	AHR, XYP, XYS

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1UR2 \| pdb_00001ur2	Download File View File

Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with arabinofuranose alpha 1,3 linked to xylotriose

Pell, G., Taylor, E.J., Gloster, T.M., Turkenburg, J.P., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 9597

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio mixtus
Macromolecule	ENDOXYLANASE (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	AHR, XYP, XYS

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1UUQ \| pdb_00001uuq	Download File View File

Exo-mannosidase from Cellvibrio mixtus

Dias, M.V.F., Vincent, F., Pell, G., Prates, J.A.M., Centeno, M.S.J., Ferreira, L.M.A., Gilbert, H.J., Davies, G.J., Fontes, C.M.G.A.

(2004) J Biological Chem 279: 25517

Released	2004-04-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio mixtus
Macromolecule	MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE (protein)
Unique Ligands	GOL, SO4

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1UXX \| pdb_00001uxx	Download File View File

CBM6ct from Clostridium thermocellum in complex with xylopentaose

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Henrissat, D.B.B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus
Macromolecule	XYLANASE U (protein)
Unique Ligands	CA
Unique branched monosaccharides	XYP

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1UXZ \| pdb_00001uxz	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)

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1UY0 \| pdb_00001uy0	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with glc-1,3-glc-1,4-glc-1,3-glc

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)
Unique Ligands	CA, CL, GOL, NA
Unique branched monosaccharides	BGC

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1UYX \| pdb_00001uyx	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with cellobiose

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

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1UYY \| pdb_00001uyy	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with cellotriose

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

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1UYZ \| pdb_00001uyz	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with xylotetraose

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)
Unique Ligands	CA, GOL, NA
Unique branched monosaccharides	XYP

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1UZ0 \| pdb_00001uz0	Download File View File

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with Glc-4Glc-3Glc-4Glc

Czjzek, M., Pires, V.M.R., Henshaw, J., Prates, J.A.M., Bolam, D., Henrissat, B., Gilbert, H.J.

(2004) J Biological Chem 279: 21560

Released	2004-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cellvibrio mixtus
Macromolecule	CELLULASE B (protein)
Unique Ligands	CA, CL, GOL
Unique branched monosaccharides	BGC

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1V0A \| pdb_00001v0a	Download File View File

Family 11 Carbohydrate-Binding Module of cellulosomal cellulase Lic26A-Cel5E of Clostridium thermocellum

Carvalho, A.L., Romao, M.J., Goyal, A., Prates, J.A.M., Pires, V.M.R., Ferreira, L.M.A., Bolam, D.N., Gilbert, H.J., Fontes, C.M.G.A.

(2004) J Biological Chem 279: 34785

Released	2005-01-12
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE H (protein)
Unique Ligands	CA, SO4

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2BM3 \| pdb_00002bm3	Download File View File

Structure of the Type II cohesin from Clostridium thermocellum SdbA

Carvalho, A.L., Gloster, T.M., Pires, V.M.R., Proctor, M.R., Prates, J.A.M., Ferreira, L.M.A., Turkenburg, J.P., Romao, M.J., Davies, G.J., Gilbert, H.J., Fontes, C.M.G.A.

(2005) J Mol Biology 349: 909

Released	2005-03-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acetivibrio thermocellus
Macromolecule	SCAFFOLDING DOCKERIN BINDING PROTEIN A (protein)
Unique Ligands	IPA

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2C24 \| pdb_00002c24	Download File View File

FAMILY 30 CARBOHYDRATE-BINDING MODULE OF CELLULOSOMAL CELLULASE CEL9D- CEL44B OF CLOSTRIDIUM THERMOCELLUM

Carvalho, A.L., Alves, V.D., Najmudin, S., Romao, M.J., Prates, J.A.M., Ferreira, L.M.A., Bolam, D.N., Gilbert, H.J., Fontes, C.M.G.A.

(2006) J Biological Chem 281: 8815

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE (protein)

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2C26 \| pdb_00002c26	Download File View File

Structural basis for the promiscuous specificity of the carbohydrate- binding modules from the beta-sandwich super family

Najmudin, S., Guerreiro, C.I.P.D., Carvalho, A.L., Bolam, D.N., Prates, J.A.M., Correia, M.A.S., Alves, V.D., Ferreira, L.M.A., Romao, M.J., Gilbert, H.J., Fontes, C.M.G.A.

(2006) J Biological Chem 281: 8815

Released	2005-10-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	CA, EDO

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2C4X \| pdb_00002c4x	Download File View File

Structural basis for the promiscuous specificity of the carbohydrate- binding modules from the beta-sandwich super family

Najmudin, S., Guerreiro, C.I.P.D., Carvalho, A.L., Bolam, D.N., Prates, J.A.M., Correia, M.A.S., Alves, V.D., Ferreira, L.M.A., Romao, M.J., Gilbert, H.J., Fontes, C.M.G.A.

(2006) J Biological Chem 281: 8815

Released	2005-10-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	CA, EDO

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2C71 \| pdb_00002c71	Download File View File

The structure of a family 4 acetyl xylan esterase from Clostridium thermocellum in complex with a magnesium ion.

Taylor, E.J., Turkenburg, P.J., Vincent, F., Brzozowski, A.M., Gloster, T.M., Dupont, C., Shareck, F., Centeno, M.S.J., Prates, J.A.M., Ferreira, L.M.A., Fontes, C.M.G.A., Biely, P., Davies, G.J.

(2006) J Biological Chem 281: 10968

Released	2006-01-23
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Acetivibrio thermocellus
Macromolecule	GLYCOSIDE HYDROLASE, FAMILY 11\:CLOSTRIDIUM CELLULOSOME ENZYME, DOCKERIN TYPE I\:POLYSACCHARIDE (protein)
Unique Ligands	MG

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2C79 \| pdb_00002c79	Download File View File

The structure of a family 4 acetyl xylan esterase from Clostridium thermocellum in complex with a colbalt ion.

Taylor, E.J., Turkenburg, P.J., Vincent, F., Brzozowski, A.M., Gloster, T.M., Dupont, C., Shareck, F., Centeno, M.S.J., Prates, J.A.M., Ferreira, L.M.A., Fontes, C.M.G.A., Biely, P., Davies, G.J.

(2006) J Biological Chem 281: 10968

Released	2006-01-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acetivibrio thermocellus
Macromolecule	GLYCOSIDE HYDROLASE, FAMILY 11\:CLOSTRIDIUM CELLULOSOME ENZYME, DOCKERIN TYPE I\:POLYSACCHARIDE (protein)
Unique Ligands	CO

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DYO | pdb_00001dyo

1GKK | pdb_00001gkk

1GMM | pdb_00001gmm

1H6X | pdb_00001h6x

1H6Y | pdb_00001h6y

1OHZ | pdb_00001ohz

1UQY | pdb_00001uqy

1UQZ | pdb_00001uqz

1UR1 | pdb_00001ur1

1UR2 | pdb_00001ur2

1UUQ | pdb_00001uuq

1UXX | pdb_00001uxx

1UXZ | pdb_00001uxz

1UY0 | pdb_00001uy0

1UYX | pdb_00001uyx

1UYY | pdb_00001uyy

1UYZ | pdb_00001uyz

1UZ0 | pdb_00001uz0

1V0A | pdb_00001v0a

2BM3 | pdb_00002bm3

2C24 | pdb_00002c24

2C26 | pdb_00002c26

2C4X | pdb_00002c4x

2C71 | pdb_00002c71

2C79 | pdb_00002c79