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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gong, X."

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Search Summary

This query matches 140 Structures.

Refinements

Structure Determination Methodology

experimental (140)

Scientific Name of Source Organism

	Homo sapiens (66)
	Arabidopsis thaliana (11)
	Saccharomyces cerevisiae S288C (8)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (7)
	Escherichia coli K-12 (6)
	Caenorhabditis elegans (5)
	Nakaseomyces glabratus CBS 138 (5)
	Legionella pneumophila (4)
	Methanoculleus marisnigri JR1 (3)
	Mus musculus (3)

More...

Taxonomy

	Eukaryota (106)
	Bacteria (32)
	Archaea (4)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (93)
	ELECTRON MICROSCOPY (45)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (140)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (20)
	2.0 - 2.5 (31)
	2.5 - 3.0 (20)
	3.0 - 3.5 (37)
	3.5 - 4.0 (14)
	4.0 - 4.5 (7)
	> 4.5 (6)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (28)
	2015 - 2019 (32)
	2020 - 2024 (75)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (45)
	Hydrolases (24)
	Translocases (15)
	Oxidoreductases (7)

Membrane Protein Annotation

	PDBTM (57)
	mpstruc (50)
	MemProtMD (47)
	OPM (33)

Symmetry Type

	Asymmetric (83)
	Cyclic (52)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Coiled coil proteins (1)
	Alpha and beta proteins (a/b) (7)
	Membrane and cell surface proteins and peptides (1)
	Artifacts (4)
	All beta proteins (3)
	All alpha proteins (4)

AllSelected

1 to 25 of 140 Structures

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2FYN \| pdb_00002fyn	Download File View File

Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex

Esser, L., Xia, D.

(2006) Proc Natl Acad Sci U S A 103: 13045-13050

Released	2006-08-29
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome b (protein) Cytochrome c1 (protein) Ubiquinol-cytochrome c reductase iron-sulfur subunit (protein)
Unique Ligands	FES, HEM, LOP, SMA

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2FYU \| pdb_00002fyu	Download File View File

Crystal structure of bovine heart mitochondrial bc1 with jg144 inhibitor

Xia, D., Esser, L.

(2006) Proc Natl Acad Sci U S A 103: 13045-13050

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FDN, FES, HEM

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2KJF \| pdb_00002kjf	Download File View File

The solution structure of the circular bacteriocin carnocyclin A (CclA)

Martin-Visscher, L.A., Gong, X., Duszyk, M., Vederas, J.

(2009) J Biological Chem 284: 28674-28681

Released	2009-08-18
Method	SOLUTION NMR
Organisms	Carnobacterium maltaromaticum
Macromolecule	Carnocyclin-A (protein)

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2LQV \| pdb_00002lqv	Download File View File

YebF

Prehna, G., Zhang, G., Gong, X., Duszyk, M., Okon, M., Mcintosh, L.P., Weiner, J.H., Strynadka, N.C.J.

(2012) Structure 20: 1154-1166

Released	2012-06-13
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Protein yebF (protein)

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3JD8 \| pdb_00003jd8	Download File View File

cryo-EM structure of the full-length human NPC1 at 4.4 angstrom

Gong, X., Qian, H.W., Zhou, X.H., Wu, J.P., Zhou, Q., Yan, N.

To be published

Released	2016-06-01
Method	ELECTRON MICROSCOPY 4.43 Å
Organisms	Homo sapiens
Macromolecule	Niemann-Pick C1 protein (protein)
Unique Ligands	CLR, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3PP1 \| pdb_00003pp1	Download File View File

Crystal Structure of the Human Mitogen-activated protein kinase kinase 1 (MEK 1) in complex with ligand and MgATP

Dougan, D.R.

(2011) Bioorg Med Chem Lett 21: 1315-1319

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	ACT, ATP, IZG, MG

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4GBY \| pdb_00004gby	Download File View File

The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to D-xylose

Sun, L.F., Zeng, X., Yan, C.Y., Yan, N.

(2012) Nature 490: 361-366

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.808 Å
Organisms	Escherichia coli K-12
Macromolecule	D-xylose-proton symporter (protein)
Unique Ligands	BNG, XYP

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4GBZ \| pdb_00004gbz	Download File View File

The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to D-glucose

Sun, L.F., Zeng, X., Yan, C.Y., Yan, N.

(2012) Nature 490: 361-366

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Escherichia coli K-12
Macromolecule	D-xylose-proton symporter (protein)
Unique Ligands	BGC, BNG

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4GC0 \| pdb_00004gc0	Download File View File

The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to 6-bromo-6-deoxy-D-glucose

Yan, N., Sun, L.F., Zeng, X., Yan, C.Y.

(2012) Nature 490: 361-366

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	D-xylose-proton symporter (protein)
Unique Ligands	6BG, BNG

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4HYC \| pdb_00004hyc	Download File View File

Structure of a presenilin family intramembrane aspartate protease in P2 space group

Li, X., Dang, S., Yan, C., Wang, J., Shi, Y.

(2013) Nature 493: 56-61

Released	2012-12-19
Method	X-RAY DIFFRACTION 3.95 Å
Organisms	Methanoculleus marisnigri JR1
Macromolecule	Putative uncharacterized protein (protein)

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4HYD \| pdb_00004hyd	Download File View File

Structure of a presenilin family intramembrane aspartate protease in C2221 space group

Li, X., Dang, S., Yan, C., Wang, J., Shi, Y.

(2013) Nature 493: 56-61

Released	2012-12-19
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Methanoculleus marisnigri JR1
Macromolecule	Putative uncharacterized protein (protein)

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4HYG \| pdb_00004hyg	Download File View File

Structure of a presenilin family intramembrane aspartate protease in C222 space group

Li, X., Dang, S., Yan, C., Wang, J., Shi, Y.

(2013) Nature 493: 56-61

Released	2012-12-19
Method	X-RAY DIFFRACTION 3.32 Å
Organisms	Methanoculleus marisnigri JR1
Macromolecule	Putative uncharacterized protein (protein)

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4HZU \| pdb_00004hzu	Download File View File

Structure of a bacterial energy-coupling factor transporter

Wang, T.L., Fu, G.B., Pan, X.J., Shi, Y.G.

(2013) Nature 497: 272-276

Released	2013-04-17
Method	X-RAY DIFFRACTION 3.53 Å
Organisms	Levilactobacillus brevis
Macromolecule	Energy-coupling factor transporter ATP-binding protein EcfA 1 (protein) Energy-coupling factor transporter ATP-binding protein EcfA 2 (protein) Energy-coupling factor transporter transmembrane protein EcfT (protein) Predicted membrane protein (protein)

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4I9Z \| pdb_00004i9z	Download File View File

Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors

Ren, J., Chen, T., Xu, Y.

(2013) Bioorg Med Chem Lett 23: 4944-4947

Released	2014-01-01
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	5BA, MG, PEG, ZN

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4IA0 \| pdb_00004ia0	Download File View File

Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors

Ren, J., Chen, T., Xu, Y.

(2013) Bioorg Med Chem Lett 23: 4944-4947

Released	2014-01-01
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	5BB, MG, ZN

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4IU8 \| pdb_00004iu8	Download File View File

Crystal structure of a membrane transporter (selenomethionine derivative)

Yan, H., Huang, W., Yan, C., Gong, X., Jiang, S., Zhao, Y., Wang, J., Shi, Y.

(2013) Cell Rep 3: 716-723

Released	2013-04-17
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Escherichia coli K-12
Macromolecule	Nitrite extrusion protein 2 (protein)
Unique Ligands	NO3

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4IU9 \| pdb_00004iu9	Download File View File

Crystal structure of a membrane transporter

Yan, H., Huang, W., Yan, C., Gong, X., Jiang, S., Zhao, Y., Wang, J., Shi, Y.

(2013) Cell Rep 3: 716-723

Released	2013-04-17
Method	X-RAY DIFFRACTION 3.005 Å
Organisms	Escherichia coli K-12
Macromolecule	Nitrite extrusion protein 2 (protein)

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4M66 \| pdb_00004m66	Download File View File

Crystal structure of the mouse RIP3 kinase domain

Xie, T., Peng, W., Yan, C., Wu, J., Shi, Y.

(2013) Cell Rep 5: 70-78

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Mus musculus
Macromolecule	Receptor-interacting serine/threonine-protein kinase 3 (protein)

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4M67 \| pdb_00004m67	Download File View File

Crystal structure of the human MLKL kinase-like domain

Xie, T., Peng, W., Yan, C., Wu, J., Shi, Y.

(2013) Cell Rep 5: 70-78

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Mixed lineage kinase domain-like protein (protein)

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4M68 \| pdb_00004m68	Download File View File

Crystal structure of the mouse MLKL kinase-like domain

Xie, T., Peng, W., Yan, C., Wu, J., Shi, Y.

(2013) Cell Rep 5: 70-78

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.696 Å
Organisms	Mus musculus
Macromolecule	Mixed lineage kinase domain-like protein (protein)
Unique Ligands	GOL

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4M69 \| pdb_00004m69	Download File View File

Crystal structure of the mouse RIP3-MLKL complex

Xie, T., Peng, W., Yan, C., Wu, J., Shi, Y.

(2013) Cell Rep 5: 70-78

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.497 Å
Organisms	Mus musculus
Macromolecule	Mixed lineage kinase domain-like protein (protein) Receptor-interacting serine/threonine-protein kinase 3 (protein)
Unique Ligands	ANP, CL, MG, SO4

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4M9R \| pdb_00004m9r	Download File View File

Crystal structure of CED-3

Xu, Y., Jeffrey, P.D., Shi, Y.G.

(2013) Genes Dev 27: 2039-2048

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.656 Å
Organisms	Caenorhabditis elegans
Macromolecule	Cell death protein 3 (protein)

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4M9S \| pdb_00004m9s	Download File View File

crystal structure of CED-4 bound CED-3 fragment

Huang, W.J., Jinag, T.Y., Choi, W.Y., Wang, J.W., Shi, Y.G.

(2013) Genes Dev 27: 2039-2048

Released	2013-10-23
Method	X-RAY DIFFRACTION 3.207 Å
Organisms	Caenorhabditis elegans
Macromolecule	CED-3 fragment (protein) Cell death protein 4 (protein)
Unique Ligands	ATP, MG

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4M9X \| pdb_00004m9x	Download File View File

Crystal structure of CED-4 bound CED-3 fragment

Huang, W.J., Jinag, T.Y., Choi, W.Y., Wang, J.W., Shi, Y.G.

(2013) Genes Dev 27: 2039-2048

Released	2013-10-23
Method	X-RAY DIFFRACTION 3.344 Å
Organisms	Caenorhabditis elegans
Macromolecule	CED-3 fragment (protein) Cell death protein 4 (protein)
Unique Ligands	ATP, MG

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4M9Y \| pdb_00004m9y	Download File View File

Crystal structure of CED-4 bound CED-3 fragment

Huang, W.J., Jinag, T.Y., Choi, W.Y., Wang, J.W., Shi, Y.G.

(2013) Genes Dev 27: 2039-2048

Released	2013-10-23
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Caenorhabditis elegans
Macromolecule	CED-3 fragment (protein) Cell death protein 4 (protein)
Unique Ligands	ATP, MG

1 to 25 of 140 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2FYN | pdb_00002fyn

2FYU | pdb_00002fyu

2KJF | pdb_00002kjf

2LQV | pdb_00002lqv

3JD8 | pdb_00003jd8

3PP1 | pdb_00003pp1

4GBY | pdb_00004gby

4GBZ | pdb_00004gbz

4GC0 | pdb_00004gc0

4HYC | pdb_00004hyc

4HYD | pdb_00004hyd

4HYG | pdb_00004hyg

4HZU | pdb_00004hzu

4I9Z | pdb_00004i9z

4IA0 | pdb_00004ia0

4IU8 | pdb_00004iu8

4IU9 | pdb_00004iu9

4M66 | pdb_00004m66

4M67 | pdb_00004m67

4M68 | pdb_00004m68

4M69 | pdb_00004m69

4M9R | pdb_00004m9r

4M9S | pdb_00004m9s

4M9X | pdb_00004m9x

4M9Y | pdb_00004m9y