RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Hehemann, J.H."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 73 Structures.

Refinements

Structure Determination Methodology

experimental (73)

Scientific Name of Source Organism

	Marinomonas primoryensis (14)
	Zobellia galactanivorans (12)
	Pseudoalteromonas fuliginea (10)
	Clostridium perfringens (5)
	Phocaeicola plebeius (5)
	Saccharophagus degradans 2-40 (5)
	Pseudoalteromonas (3)
	Salegentibacter sp. Hel_I_6 (3)
	Streptococcus pneumoniae (3)
	Allomuricauda sp. MAR_2010_75 (2)

More...

Taxonomy

Bacteria (73)

Experimental Method

X-RAY DIFFRACTION (73)

Polymer Entity Type

Protein (73)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (23)
	1.5 - 2.0 (21)
	2.0 - 2.5 (21)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (25)
	2015 - 2019 (25)
	2020 - 2024 (20)

Enzyme Classification Name

	Hydrolases (23)
	Oxidoreductases (2)
	Isomerases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (54)
	Cyclic (17)
	Dihedral (2)

SCOP Classification

	All beta proteins (6)
	Artifacts (6)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 73 Structures

Page 1 of 3

Sort by

Explore in 3D

2V5C \| pdb_00002v5c	Download File View File

Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA, CAC, NA

Explore in 3D

2V5D \| pdb_00002v5d	Download File View File

Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA

Explore in 3D

2W1N \| pdb_00002w1n	Download File View File

cohesin and fibronectin type-III double module construct from the Clostridium perfringens glycoside hydrolase GH84C

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Czjzek, M., Smith, S.J., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	ACT

Explore in 3D

2YHG \| pdb_00002yhg	Download File View File

Ab initio phasing of a nucleoside hydrolase-related hypothetical protein from Saccharophagus degradans that is associated with carbohydrate metabolism

Hehemann, J.H., Marsters, C., Boraston, A.B.

(2011) Proteins 79: 2992-2998

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Saccharophagus degradans 2-40
Macromolecule	CELLULOSE-BINDING PROTEIN (protein)
Unique Ligands	BTB, CA, CL, EDO, MG, ZN

Explore in 3D

3ILF \| pdb_00003ilf	Download File View File

Crystal structure of porphyranase A (PorA) in complex with neo-porphyrotetraose

Hehemann, J.H., Correc, G., Barbeyron, T., Helbert, W., Michel, G., Czjzek, M.

(2010) Nature 464: 908-912

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	porphyranase A (protein)
Unique Ligands	ACT, CA, CL, MG
Unique branched monosaccharides	GAL, GLA, L6S

Explore in 3D

3JUU \| pdb_00003juu	Download File View File

Crystal structure of porphyranase B (PorB) from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Barbeyron, T., Michel, G., Czjzek, M.

(2010) Nature 464: 908-912

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	porphyranase B (protein)
Unique Ligands	GOL, MES, SO4

Explore in 3D

3QPF \| pdb_00003qpf	Download File View File

Analysis of a New Family of Widely Distributed Metal-independent alpha-Mannosidases Provides Unique Insight into the Processing of N-linked Glycans, Streptococcus pneumoniae SP_2144 apo-structure

Gregg, K.J., Zandberg, W.F., Hehemann, J.-H., Whitworth, G.E., Deng, L.E., Vocadlo, D.J.

(2011) J Biological Chem 286: 15586-15596

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	EDO

Explore in 3D

3QRY \| pdb_00003qry	Download File View File

Analysis of a new family of widely distributed metal-independent alpha mannosidases provides unique insight into the processing of N-linked glycans, Streptococcus pneumoniae SP_2144 1-deoxymannojirimycin complex

Gregg, K.J., Zandberg, W.F., Hehemann, J.-H., Whitworth, G.E., Deng, L.E., Vocadlo, D.J., Boraston, A.B.

(2011) J Biological Chem 286: 15586-15596

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	DMJ, EDO

Explore in 3D

3QSP \| pdb_00003qsp	Download File View File

Analysis of a new family of widely distributed metal-independent alpha mannosidases provides unique insight into the processing of N-linked glycans, Streptococcus pneumoniae SP_2144 non-productive substrate complex with alpha-1,6-mannobiose

Gregg, K.J., Zandberg, W.F., Hehemann, J.-H., Whitworth, G.E., Deng, L.E., Vocadlo, D.J., Boraston, A.B.

(2011) J Biological Chem 286: 15586-15596

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, MAN

Explore in 3D

3QT3 \| pdb_00003qt3	Download File View File

Analysis of a New Family of Widely Distributed Metal-independent alpha-Mannosidases Provides Unique Insight into the Processing of N-linked Glycans, Clostridium perfringens CPE0426 apo-structure

Gregg, K.J., Zandberg, W.F., Hehemann, J.-H., Whitworth, G.E., Deng, L.E., Vocadlo, D.J., Boraston, A.B.

(2011) J Biological Chem 286: 15586-15596

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium perfringens
Macromolecule	Putative uncharacterized protein CPE0426 (protein)
Unique Ligands	EDO

Explore in 3D

3QT9 \| pdb_00003qt9	Download File View File

Analysis of a new family of widely distributed metal-independent alpha mannosidases provides unique insight into the processing of N-linked glycans, Clostridium perfringens CPE0426 complexed with alpha-1,6-linked 1-thio-alpha-mannobiose

Gregg, K.J., Zandberg, W.F., Hehemann, J.-H., Whitworth, G.E., Deng, L.E., Vocadlo, D.J., Boraston, A.B.

(2011) J Biological Chem 286: 15586-15596

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Clostridium perfringens
Macromolecule	Putative uncharacterized protein CPE0426 (protein)
Unique Ligands	EDO
Unique branched monosaccharides	MAN, Z4Y

Explore in 3D

4AK5 \| pdb_00004ak5	Download File View File

Native crystal structure of BpGH117

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	CL, EDO, MG

Explore in 3D

4AK6 \| pdb_00004ak6	Download File View File

BpGH117_H302E mutant glycoside hydrolase

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	MG

Explore in 3D

4AK7 \| pdb_00004ak7	Download File View File

Crystal structure of BpGH117_E303Q in complex with neoagarobiose

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	47N, ACT, CA, CL, EDO, MG

Explore in 3D

4ASM \| pdb_00004asm	Download File View File

Crystal structure of the catalytic domain of beta-agarase D from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Bernard, T., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-AGARASE D (protein)
Unique Ligands	CA, IMD, PEG

Explore in 3D

4ATE \| pdb_00004ate	Download File View File

High resolution crystal structure of beta-porphyranase A from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Jam, M., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-PORPHYRANASE A (protein)
Unique Ligands	CA, CL, SO4

Explore in 3D

4ATF \| pdb_00004atf	Download File View File

Crystal structure of inactivated mutant beta-agarase B in complex with agaro-octaose

Bernard, T., Hehemann, J.H., Correc, G., Jam, M., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-AGARASE B (protein)
Unique Ligands	NA
Unique branched monosaccharides	AAL, GAL

Explore in 3D

4AW7 \| pdb_00004aw7	Download File View File

BpGH86A: A beta-porphyranase of glycoside hydrolase family 86 from the human gut bacterium Bacteroides plebeius

Hehemann, J.H., Kelly, A.G., Pudlo, N.A., Martens, E.C., Boraston, A.B.

(2012) Proc Natl Acad Sci U S A 109: 19786-19791

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Phocaeicola plebeius
Macromolecule	GH86A BETA-PORPHYRANASE (protein)
Unique Ligands	CA, CL, EDO, GAL, IOD, K
Unique branched monosaccharides	AAL, GAL, GLA, L6S

Explore in 3D

4AWD \| pdb_00004awd	Download File View File

Crystal structure of the beta-porphyranase BpGH16B (BACPLE_01689) from the human gut bacterium Bacteroides plebeius

Hehemann, J.H., Kelly, A.G., Pudlo, N.A., Martens, E.C., Boraston, A.B.

(2012) Proc Natl Acad Sci U S A 109: 19786-19791

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Phocaeicola plebeius
Macromolecule	BETA-PORPHYRANASE (protein)
Unique Ligands	CA, GOL

Explore in 3D

4B28 \| pdb_00004b28	Download File View File

Crystal structure of DMSP lyase RdDddP from Roseobacter denitrificans

Hehemann, J.H., Law, A., Redecke, L., Boraston, A.B.

(2014) PLoS One 9: 03128

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	METALLOPEPTIDASE, FAMILY M24, PUTATIVE (protein)
Unique Ligands	FE

Explore in 3D

4B29 \| pdb_00004b29	Download File View File

Crystal structures of DMSP lyases RdDddP and RnDddQII

Hehemann, J.H., Law, A., Redecke, L., Boraston, A.B.

To be published

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	DIMETHYLSULFONIOPROPIONATE LYASE (protein)
Unique Ligands	BR, EDO, NI, PO4, ZN

Explore in 3D

4BOW \| pdb_00004bow	Download File View File

Crystal structure of LamA_E269S from Z. galactanivorans in complex with laminaritriose and laminaritetraose

Labourel, A., Jeudy, A., Czjzek, M., Michel, G.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	BGC, CA, NA
Unique branched monosaccharides	BGC, GLC

Explore in 3D

4BPZ \| pdb_00004bpz	Download File View File

Crystal structure of lamA_E269S from Zobellia galactanivorans in complex with a trisaccharide of 1,3-1,4-beta-D-glucan.

Labourel, A., Jam, M., Jeudy, A., Czjzek, M., Michel, G.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

Explore in 3D

4BQ1 \| pdb_00004bq1	Download File View File

Crystal structure of of LamAcat from Zobellia galactanivorans

Labourel, A., Jam, M., Jeudy, A., Michel, G., Czjzek, M.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	CA, GOL