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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hoffman, D."

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This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (10)
	Drosophila melanogaster (2)
	Aspergillus nidulans FGSC A4 (1)
	Staphylococcus aureus subsp. aureus USA300_TCH1516 (1)

Taxonomy

	Eukaryota (13)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (5)

Enzyme Classification Name

	Transferases (10)
	Hydrolases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Membrane and cell surface proteins and peptides (1)
	All alpha proteins (2)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (2)
	Artifacts (2)

AllSelected

1 to 14 of 14 Structures

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2KTL \| pdb_00002ktl	Download File View File

Structure of C-terminal domain from mtTyrRS of A. nidulans

Chari, N.S.

To be published

Released	2011-05-04
Method	SOLUTION NMR
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Tyrosyl-tRNA synthetase (protein)

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2P2H \| pdb_00002p2h	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridinyl-triazine inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 611-626

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	994

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2P2I \| pdb_00002p2i	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a nicotinamide inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 611-626

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	608

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2P4I \| pdb_00002p4i	Download File View File

Evolution of a highly Selective and Potent 2-(Pyridin-2-yl)-1,3,5-triazine Tie-2 Kinase Inhibitor

Bellon, S.F.

(2007) J Med Chem 50: 611-626

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Angiopoietin-1 receptor (protein)
Unique Ligands	MR9

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3CCN \| pdb_00003ccn	Download File View File

X-ray structure of c-Met with triazolopyridazine inhibitor.

Abrecht, B.K., Harmange, J.-C., Bauer, D., Dussault, I., long, A., Bellon, S.F.

(2008) J Med Chem 51: 2879-2882

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)
Unique Ligands	LKG

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3CD8 \| pdb_00003cd8	Download File View File

X-ray Structure of c-Met with triazolopyridazine Inhibitor.

Bellon, S.F., Albrecht, B.K., Harmange, J.-C., Bauer, D., Choquette, D., Dussault, I.

(2008) J Med Chem 51: 2879-2882

Released	2008-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)
Unique Ligands	L5G

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3DDF \| pdb_00003ddf	Download File View File

GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1 phenylethyl]amino}methyl) pyrrolidin-2-one

Kuntz, D.A., Rose, D.R., Hoffman, D.

(2008) Bioorg Med Chem 16: 7337-7346

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase 2 (protein)
Unique Ligands	GB6, MPD, MRD, NAG, ZN

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3DDG \| pdb_00003ddg	Download File View File

GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1 phenylethyl]amino}methyl) methylpyrrolidin-2-one

Kuntz, D.A., Rose, D.R., Hoffman, D.

(2008) Bioorg Med Chem 16: 7337-7346

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase 2 (protein)
Unique Ligands	GB7, MRD, NAG, PO4, ZN

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3EFJ \| pdb_00003efj	Download File View File

Structure of c-Met with pyrimidone inhibitor 7

D'Angelo, N., Bellon, S., Whittington, D.

(2008) J Med Chem 51: 5766-5779

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)
Unique Ligands	MT3

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3EFK \| pdb_00003efk	Download File View File

Structure of c-Met with pyrimidone inhibitor 50

Bellon, S.F., D'Angelo, N., Whittington, D., Dussault, I.

(2008) J Med Chem 51: 5766-5779

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)
Unique Ligands	MT4

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3L9L \| pdb_00003l9l	Download File View File

Crystal structure of pka with compound 36

Huang, X.

(2010) Bioorg Med Chem Lett 20: 1559-1564

Released	2011-01-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	L9L

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3L9M \| pdb_00003l9m	Download File View File

Crystal structure of PKAB3 (pka triple mutant V123A, L173M, Q181K) with compound 18

Huang, X.

(2010) Bioorg Med Chem Lett 20: 1559-1564

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	L9M

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3L9N \| pdb_00003l9n	Download File View File

crystal structure of PKAB3 (pka triple mutant V123A, L173M, Q181K) with compound 27

Huang, X.

(2010) Bioorg Med Chem Lett 20: 1559-1564

Released	2011-01-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	L9N

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4TW1 \| pdb_00004tw1	Download File View File

Crystal structure of the octameric pore complex of the Staphylococcus aureus Bi-component Toxin LukGH

Logan, D.T., Hakansson, M., Saline, M., Kimbung, R., Badarau, A., Rouha, H., Nagy, E.

(2015) J Biological Chem 290: 142-156

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus subsp. aureus USA300_TCH1516
Macromolecule	Possible leukocidin subunit (protein)

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2KTL | pdb_00002ktl

Structure of C-terminal domain from mtTyrRS of A. nidulans

2P2H | pdb_00002p2h

Crystal structure of the VEGFR2 kinase domain in complex with a pyridinyl-triazine inhibitor

2P2I | pdb_00002p2i

Crystal structure of the VEGFR2 kinase domain in complex with a nicotinamide inhibitor

2P4I | pdb_00002p4i

Evolution of a highly Selective and Potent 2-(Pyridin-2-yl)-1,3,5-triazine Tie-2 Kinase Inhibitor

3CCN | pdb_00003ccn

X-ray structure of c-Met with triazolopyridazine inhibitor.

3CD8 | pdb_00003cd8

X-ray Structure of c-Met with triazolopyridazine Inhibitor.

3DDF | pdb_00003ddf

GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1 phenylethyl]amino}methyl) pyrrolidin-2-one

3DDG | pdb_00003ddg

GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1 phenylethyl]amino}methyl) methylpyrrolidin-2-one

3EFJ | pdb_00003efj

Structure of c-Met with pyrimidone inhibitor 7

3EFK | pdb_00003efk

Structure of c-Met with pyrimidone inhibitor 50

3L9L | pdb_00003l9l

Crystal structure of pka with compound 36

3L9M | pdb_00003l9m

Crystal structure of PKAB3 (pka triple mutant V123A, L173M, Q181K) with compound 18

3L9N | pdb_00003l9n

crystal structure of PKAB3 (pka triple mutant V123A, L173M, Q181K) with compound 27

4TW1 | pdb_00004tw1

Crystal structure of the octameric pore complex of the Staphylococcus aureus Bi-component Toxin LukGH

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KTL | pdb_00002ktl

2P2H | pdb_00002p2h

2P2I | pdb_00002p2i

2P4I | pdb_00002p4i

3CCN | pdb_00003ccn

3CD8 | pdb_00003cd8

3DDF | pdb_00003ddf

3DDG | pdb_00003ddg

3EFJ | pdb_00003efj

3EFK | pdb_00003efk

3L9L | pdb_00003l9l

3L9M | pdb_00003l9m

3L9N | pdb_00003l9n

4TW1 | pdb_00004tw1