RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Kanaya, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 104 Structures.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	Escherichia coli (26)
	Thermococcus kodakarensis KOD1 (25)
	Pseudomonas sp. MIS38 (7)
	Thermococcus kodakarensis (6)
	Sulfurisphaera tokodaii (5)
	Escherichia coli K-12 (4)
	Geobacillus stearothermophilus (4)
	uncultured organism (4)
	uncultured bacterium (3)
	Halobacterium salinarum NRC-1 (2)

More...

Taxonomy

	Bacteria (56)
	Archaea (44)
	unclassified sequences (4)

Experimental Method

X-RAY DIFFRACTION (104)

Polymer Entity Type

	Protein (104)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (43)
	2.0 - 2.5 (43)
	2.5 - 3.0 (10)
	3.0 - 3.5 (2)

Release Date

	1990 - 1994 (16)
	1995 - 1999 (4)
	2000 - 2004 (1)
	2005 - 2009 (42)
	2010 - 2014 (34)
	2015 - 2019 (4)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (92)
	Transferases (5)
	Isomerases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (84)
	Cyclic (24)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (58)
	All beta proteins (1)
	Artifacts (2)

AllSelected

1 to 25 of 104 Structures

Page 1 of 5

Sort by

Explore in 3D

1GOA \| pdb_00001goa	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1GOB \| pdb_00001gob	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1GOC \| pdb_00001goc	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1IO2 \| pdb_00001io2	Download File View File

Crystal structure of type 2 ribonuclease h from hyperthermophilic archaeon, thermococcus kodakaraensis kod1

Muroya, A., Tsuchiya, D., Ishikawa, M., Haruki, M., Morikawa, M.

(2001) Protein Sci 10: 707-714

Released	2001-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	RIBONUCLEASE HII (protein)

Explore in 3D

1KVA \| pdb_00001kva	Download File View File

E. COLI RIBONUCLEASE HI D134A MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1KVB \| pdb_00001kvb	Download File View File

E. COLI RIBONUCLEASE HI D134H MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1KVC \| pdb_00001kvc	Download File View File

E. COLI RIBONUCLEASE HI D134N MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1LAV \| pdb_00001lav	Download File View File

STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE

Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 6171-6178

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1LAW \| pdb_00001law	Download File View File

STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE

Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 6171-6178

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RBR \| pdb_00001rbr	Download File View File

STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.

(1993) Protein Eng 6: 85-91

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RBS \| pdb_00001rbs	Download File View File

STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.

(1993) Protein Eng 6: 85-91

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RBT \| pdb_00001rbt	Download File View File

STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.

(1993) Protein Eng 6: 85-91

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RBU \| pdb_00001rbu	Download File View File

STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.

(1993) Protein Eng 6: 85-91

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RBV \| pdb_00001rbv	Download File View File

STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.

(1993) Protein Eng 6: 85-91

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RDA \| pdb_00001rda	Download File View File

CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI

Katayanagi, K., Morikawa, K.

(1993) J Biological Chem 268: 22092-22099

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RDB \| pdb_00001rdb	Download File View File

CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI

Katayanagi, K., Morikawa, K.

(1993) J Biological Chem 268: 22092-22099

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RDC \| pdb_00001rdc	Download File View File

CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI

Katayanagi, K., Morikawa, K.

(1993) J Biological Chem 268: 22092-22099

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1RDD \| pdb_00001rdd	Download File View File

CRYSTAL STRUCTURE OF ESCHERICHIA COLI RNASE HI IN COMPLEX WITH MG2+ AT 2.8 ANGSTROMS RESOLUTION: PROOF FOR A SINGLE MG2+ SITE

Katayanagi, K., Morikawa, K.

(1993) Proteins 17: 337-346

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)
Unique Ligands	MG

Explore in 3D

1RIL \| pdb_00001ril	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE H FROM THERMUS THERMOPHILUS HB8 REFINED AT 2.8 ANGSTROMS RESOLUTION

Ishikawa, K., Okumura, M., Katayanagi, K., Kimura, S., Kanaya, S., Nakamura, H., Morikawa, K.

(1993) J Mol Biology 230: 529-542

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	RIBONUCLEASE H (protein)

Explore in 3D

1WSE \| pdb_00001wse	Download File View File

Co-crystal structure of E.coli RNase HI active site mutant (E48A*) with Mn2+

Tsunaka, Y., Takano, K., Matsumura, H., Yamagata, Y., Kanaya, S.

(2005) J Mol Biology 345: 1171-1183

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease HI (protein)
Unique Ligands	MN

Explore in 3D

1WSF \| pdb_00001wsf	Download File View File

Co-crystal structure of E.coli RNase HI active site mutant (D134A*) with Mn2+

Tsunaka, Y., Takano, K., Matsumura, H., Yamagata, Y., Kanaya, S.

(2005) J Mol Biology 345: 1171-1183

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease HI (protein)
Unique Ligands	MN

Explore in 3D

1WSG \| pdb_00001wsg	Download File View File

Co-crystal structure of E.coli RNase HI active site mutant (E48A/D134N*) with Mn2+

Tsunaka, Y., Takano, K., Matsumura, H., Yamagata, Y., Kanaya, S.

(2005) J Mol Biology 345: 1171-1183

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease HI (protein)
Unique Ligands	MN

Explore in 3D

1X0M \| pdb_00001x0m	Download File View File

a Human Kynurenine Aminotransferase II Homologue from Pyrococcus horikoshii OT3

Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.

(2005) Proteins 61: 685-688

Released	2005-04-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Aminotransferase II Homologue (protein)

Explore in 3D

1X1P \| pdb_00001x1p	Download File View File

Crystal structure of Tk-RNase HII(1-197)-A(28-42)

Takano, K., Endo, S., Mukaiyama, A., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.

(2006) FEBS J 273: 150-158

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	Ribonuclease HII (protein)

Explore in 3D

2AYQ \| pdb_00002ayq	Download File View File

3-ISOPROPYLMALATE DEHYDROGENASE FROM THE MODERATE FACULTATIVE THERMOPHILE, BACILLUS COAGULANS

Tsuchiya, D., Takenaka, A.

(1997) J Biochem 122: 1092-1104

Released	1998-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Heyndrickxia coagulans
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE (protein)

1 to 25 of 104 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GOA | pdb_00001goa

1GOB | pdb_00001gob

1GOC | pdb_00001goc

1IO2 | pdb_00001io2

1KVA | pdb_00001kva

1KVB | pdb_00001kvb

1KVC | pdb_00001kvc

1LAV | pdb_00001lav

1LAW | pdb_00001law

1RBR | pdb_00001rbr

1RBS | pdb_00001rbs

1RBT | pdb_00001rbt

1RBU | pdb_00001rbu

1RBV | pdb_00001rbv

1RDA | pdb_00001rda

1RDB | pdb_00001rdb

1RDC | pdb_00001rdc

1RDD | pdb_00001rdd

1RIL | pdb_00001ril

1WSE | pdb_00001wse

1WSF | pdb_00001wsf

1WSG | pdb_00001wsg

1X0M | pdb_00001x0m

1X1P | pdb_00001x1p

2AYQ | pdb_00002ayq