RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Koepke, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 61 Structures.

Refinements

Structure Determination Methodology

experimental (61)

Scientific Name of Source Organism

	Cereibacter sphaeroides (14)
	Loligo vulgaris (14)
	Rauvolfia serpentina (11)
	Mus musculus (4)
	Aspergillus oryzae (3)
	Pyrococcus furiosus DSM 3638 (3)
	Thermus thermophilus (3)
	Glycine max (2)
	Paracoccus denitrificans (2)
	Saccharomyces cerevisiae (2)

More...

Taxonomy

	Eukaryota (36)
	Bacteria (23)
	Archaea (4)

Experimental Method

X-RAY DIFFRACTION (61)

Polymer Entity Type

Protein (61)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (4)
	1.5 - 2.0 (12)
	2.0 - 2.5 (20)
	2.5 - 3.0 (19)
	3.0 - 3.5 (4)

Release Date

	1985 - 1989 (2)
	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (6)
	2005 - 2009 (35)
	2010 - 2014 (3)
	2015 - 2019 (9)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (30)
	Oxidoreductases (7)
	Lyases (12)
	Translocases (4)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (23)
	MemProtMD (21)
	OPM (8)
	mpstruc (7)

Symmetry Type

	Asymmetric (51)
	Cyclic (5)
	Dihedral (5)

SCOP Classification

	Membrane and cell surface proteins and peptides (19)
	All beta proteins (35)
	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (2)
	Small proteins (2)

AllSelected

1 to 25 of 61 Structures

Page 1 of 3

Sort by

Explore in 3D

1D6R \| pdb_00001d6r	Download File View File

CRYSTAL STRUCTURE OF CANCER CHEMOPREVENTIVE BOWMAN-BIRK INHIBITOR IN TERNARY COMPLEX WITH BOVINE TRYPSIN AT 2.3 A RESOLUTION. STRUCTURAL BASIS OF JANUS-FACED SERINE PROTEASE INHIBITOR SPECIFICITY

Koepke, J., Ermler, U., Wenzl, G., Flecker, P.

(2000) J Mol Biology 298: 477-491

Released	2000-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Glycine max
Macromolecule	BOWMAN-BIRK PROTEINASE INHIBITOR PRECURSOR (protein) TRYPSINOGEN (protein)

Explore in 3D

1E1A \| pdb_00001e1a	Download File View File

Crystal structure of DFPase from Loligo vulgaris

Koepke, J., Scharff, E.I., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493

Released	2001-06-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Loligo vulgaris
Macromolecule	DIISOPROPYLFLUOROPHOSPHATASE (protein)
Unique Ligands	CA

Explore in 3D

1EZV \| pdb_00001ezv	Download File View File

STRUCTURE OF THE YEAST CYTOCHROME BC1 COMPLEX CO-CRYSTALLIZED WITH AN ANTIBODY FV-FRAGMENT

Hunte, C., Koepke, J., Lange, C., Rossmanith, T., Michel, H.

(2000) Structure 8: 669-684

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, SMA, UQ6

Explore in 3D

1K9B \| pdb_00001k9b	Download File View File

Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation

Voss, R.H., Ermler, U., Essen, L.O., Wenzl, G., Kim, Y.M., Flecker, P.

(1996) Eur J Biochem 242: 122-131

Released	2001-11-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Glycine max
Macromolecule	BOWMAN-BIRK TYPE PROTEINASE INHIBITOR (protein)

Explore in 3D

1KB9 \| pdb_00001kb9	Download File View File

YEAST CYTOCHROME BC1 COMPLEX

Lange, C., Nett, J.H., Trumpower, B.L., Hunte, C.

(2001) EMBO J 20: 6591-6600

Released	2002-09-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11
Unique Ligands	CDL, FES, HEM, PCF, PEF, PIE, SMA, UMQ, UQ6

Explore in 3D

1LGH \| pdb_00001lgh	Download File View File

CRYSTAL STRUCTURE OF THE LIGHT-HARVESTING COMPLEX II (B800-850) FROM RHODOSPIRILLUM MOLISCHIANUM

Koepke, J., Hu, X., Schulten, K., Michel, H.

(1996) Structure 4: 581-597

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Magnetospirillum molischianum
Macromolecule	LIGHT HARVESTING COMPLEX II (protein)
Unique Ligands	BCL, DET, HTO, LYC

Explore in 3D

1LRA \| pdb_00001lra	Download File View File

CRYSTALLOGRAPHIC STUDY OF GLU 58 ALA RNASE T1(ASTERISK)2'-GUANOSINE MONOPHOSPHATE AT 1.9 ANGSTROMS RESOLUTION

Pletinckx, J., Steyaert, J., Choe, H.-W., Heinemann, U., Wyns, L.

(1994) Biochemistry 33: 1654-1662

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, NA

Explore in 3D

1PJX \| pdb_00001pjx	Download File View File

0.85 ANGSTROM STRUCTURE OF SQUID GANGLION DFPASE

Koepke, J., Rueterjans, H., Luecke, C., Fritzsch, G.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1744-1754

Released	2004-06-08
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	Loligo vulgaris
Macromolecule	DIISOPROPYLFLUOROPHOSPHATASE (protein)
Unique Ligands	CA, DXE, EDO, GOL, ME2, MES, MXE, PEG, PGE

Explore in 3D

1RST \| pdb_00001rst	Download File View File

COMPLEX BETWEEN STREPTAVIDIN AND THE STREP-TAG PEPTIDE

Koepke, J., Schmidt, T., Skerra, A.

(1996) J Mol Biology 255: 753-766

Released	1997-05-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	STREP-TAG PEPTIDE (protein) STREPTAVIDIN (protein)

Explore in 3D

1RSU \| pdb_00001rsu	Download File View File

COMPLEX BETWEEN STREPTAVIDIN AND THE STREP-TAG II PEPTIDE

Koepke, J., Schmidt, T., Skerra, A.

(1996) J Mol Biology 255: 753-766

Released	1997-05-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	STREP-TAG II PEPTIDE (protein) STREPTAVIDIN (protein)

Explore in 3D

2BGH \| pdb_00002bgh	Download File View File

Crystal structure of Vinorine Synthase

Ma, X., Koepke, J., Panjikar, S., Fritzsch, G., Stoeckigt, J.

(2005) J Biological Chem 280: 13576

Released	2005-01-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rauvolfia serpentina
Macromolecule	VINORINE SYNTHASE (protein)

Explore in 3D

2EA1 \| pdb_00002ea1	Download File View File

Crystal structure of Ribonuclease I from Escherichia coli COMPLEXED WITH GUANYLYL-2(PRIME),5(PRIME)-GUANOSINE

Zhou, K., Pan, J., Padmanabhan, S., Lim, R.W., Lim, L.W.

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease I (protein)
Unique Ligands	GPG

Explore in 3D

2FP8 \| pdb_00002fp8	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)

Explore in 3D

2FP9 \| pdb_00002fp9	Download File View File

Crystal structure of Native Strictosidine Synthase

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)
Unique Ligands	TLA

Explore in 3D

2FPB \| pdb_00002fpb	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine Synthase (protein)
Unique Ligands	TSS

Explore in 3D

2FPC \| pdb_00002fpc	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)
Unique Ligands	SCG

Explore in 3D

2IAO \| pdb_00002iao	Download File View File

Crystal structure of squid ganglion DFPase E37Q mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Loligo vulgaris
Macromolecule	DIISOPROPYLFLUOROPHOSPHATASE (protein)
Unique Ligands	CA

Explore in 3D

2IAP \| pdb_00002iap	Download File View File

Crystal structure of squid ganglion DFPase E21Q mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAQ \| pdb_00002iaq	Download File View File

Crystal structure of squid ganglion DFPase S271A mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAR \| pdb_00002iar	Download File View File

Crystal structure of squid ganglion DFPase W244H mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAS \| pdb_00002ias	Download File View File

Crystal structure of squid ganglion DFPase W244F mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAT \| pdb_00002iat	Download File View File

Crystal structure of squid ganglion DFPase W244L mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAU \| pdb_00002iau	Download File View File

Crystal structure of squid ganglion DFPase W244Y mutant

Scharff, E.I., Koepke, J., Fritzsch, G., Luecke, C., Rueterjans, H.

(2001) Structure 9: 493-502

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAV \| pdb_00002iav	Download File View File

Crystal structure of squid ganglion DFPase H287A mutant

Katsemi, V., Luecke, C., Koepke, J., Loehr, F., Maurer, S., Fritzsch, G., Rueterjans, H.

(2005) Biochemistry 44: 9022-9033

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

Explore in 3D

2IAW \| pdb_00002iaw	Download File View File

Crystal structure of squid ganglion DFPase N175D mutant

Katsemi, V., Luecke, C., Koepke, J., Loehr, F., Maurer, S., Fritzsch, G., Rueterjans, H.

(2005) Biochemistry 44: 9022-9033

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Loligo vulgaris
Macromolecule	Diisopropylfluorophosphatase (protein)
Unique Ligands	CA

1 to 25 of 61 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D6R | pdb_00001d6r

1E1A | pdb_00001e1a

1EZV | pdb_00001ezv

1K9B | pdb_00001k9b

1KB9 | pdb_00001kb9

1LGH | pdb_00001lgh

1LRA | pdb_00001lra

1PJX | pdb_00001pjx

1RST | pdb_00001rst

1RSU | pdb_00001rsu

2BGH | pdb_00002bgh

2EA1 | pdb_00002ea1

2FP8 | pdb_00002fp8

2FP9 | pdb_00002fp9

2FPB | pdb_00002fpb

2FPC | pdb_00002fpc

2IAO | pdb_00002iao

2IAP | pdb_00002iap

2IAQ | pdb_00002iaq

2IAR | pdb_00002iar

2IAS | pdb_00002ias

2IAT | pdb_00002iat

2IAU | pdb_00002iau

2IAV | pdb_00002iav

2IAW | pdb_00002iaw