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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kumari, P."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (15)
	Danio rerio (3)
	Lama glama (3)
	Pyrococcus abyssi GE5 (3)
	Caenorhabditis elegans (2)
	Entamoeba histolytica HM-1:IMSS-A (2)
	Tequatrovirus T4 (2)
	Arabidopsis thaliana (1)
	Entamoeba histolytica (1)
	Neurospora crassa OR74A (1)

More...

Taxonomy

	Eukaryota (24)
	Archaea (3)
	Duplodnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (10)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (24)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (1)
	2015 - 2019 (9)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (6)
	Oxidoreductases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (6)
	OPM (4)
	MemProtMD (4)
	mpstruc (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (11)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 24 of 24 Structures

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2VKZ \| pdb_00002vkz	Download File View File

Structure of the cerulenin-inhibited fungal fatty acid synthase type I multienzyme complex

Johansson, P., Wiltschi, B., Kumari, P., Kessler, B., Vonrhein, C., Vonck, J., Oesterhelt, D., Grininger, M.

(2008) Proc Natl Acad Sci U S A 105: 12803

Released	2008-08-12
Method	X-RAY DIFFRACTION 4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	FATTY ACID SYNTHASE SUBUNIT ALPHA (protein) FATTY ACID SYNTHASE SUBUNIT BETA (protein)
Unique Ligands	CER, FMN

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5ZKK \| pdb_00005zkk	Download File View File

Crystal structure of Phosphoserine phosphatase from Entamoeba histolytica

Kumari, P., Gourinath, S.

(2019) J Struct Biol 206: 254-266

Released	2019-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Entamoeba histolytica HM-1:IMSS-A
Macromolecule	Phosphoglycerate mutase family protein, putative (protein)
Unique Ligands	144, BME, GOL, PEG, PG4, PO4

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5ZR2 \| pdb_00005zr2	Download File View File

Crystal Structure of Phosphoserine Phosphatase Mutant (H9A) from Entamoeba histolytica in complex with Phosphoserine

Kumari, P., Gourinath, S.

(2019) J Struct Biol 206: 254-266

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Entamoeba histolytica HM-1:IMSS-A
Macromolecule	Phosphoglycerate mutase family protein, putative (protein)
Unique Ligands	PEG, PG4, SEP, SO4

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6FPT \| pdb_00006fpt	Download File View File

Crystal structure of Danio rerio Lin41 filamin-NHL domains

Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.

(2018) Nat Commun 9: 1549-1549

Released	2018-05-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Danio rerio
Macromolecule	E3 ubiquitin-protein ligase TRIM71 (protein)

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6FQ3 \| pdb_00006fq3	Download File View File

Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA

Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.

(2018) Nat Commun 9: 1549-1549

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Caenorhabditis elegans Danio rerio
Macromolecule	E3 ubiquitin-protein ligase TRIM71 (protein) RNA (5'-R(GPGPAPGPUPCPCPAPAPCPUPCP*C)-3') (nucleic acid)
Unique Ligands	CL

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6FQL \| pdb_00006fql	Download File View File

Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with mab-10 3'UTR 13mer RNA

Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.

(2018) Nat Commun 9: 1549-1549

Released	2018-05-09
Method	X-RAY DIFFRACTION 2.349 Å
Organisms	Caenorhabditis elegans Danio rerio
Macromolecule	E3 ubiquitin-protein ligase TRIM71 (protein) RNA (5'-R(UPGPCPAPUPUPUPAPAPUPGPCP*A)-3') (nucleic acid)
Unique Ligands	CL

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6LE1 \| pdb_00006le1	Download File View File

Structure of RRM2 domain of DND1 protein

Kumari, P., Bhavesh, N.S.

(2021) Protein Sci 30: 1184-1195

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Dead end protein homolog 1 (protein)
Unique Ligands	GOL, SO4

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6M1X \| pdb_00006m1x	Download File View File

Crystal structure of Phosphoserine Phosphatase in complex with 3-Phosphoglyceric Acid from Entamoeba histolytica

Kumari, P., Gourinath, S.

(2021) Int J Biol Macromol 178: 1-10

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Entamoeba histolytica
Macromolecule	Phosphoglycerate mutase family protein (protein)
Unique Ligands	3PG, PO4

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6RT0 \| pdb_00006rt0	Download File View File

cryo-em structure of alpha-synuclein fibril polymorph 2A

Guerrero-Ferreira, R., Taylor, N.M.I., Arteni, A.A., Melki, R., Meier, B.H., Bockmann, A., Bousset, L., Stahlberg, H.

(2019) Elife 8:

Released	2019-06-26
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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6RTB \| pdb_00006rtb	Download File View File

cryo-em structure of alpha-synuclein fibril polymorph 2B

Guerrero-Ferreira, R., Taylor, N.M.I., Arteni, A.A., Melki, R., Meier, B.H., Bockmann, A., Bousset, L., Stahlberg, H.

(2019) Elife 8:

Released	2019-06-26
Method	ELECTRON MICROSCOPY 3.46 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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6SST \| pdb_00006sst	Download File View File

cryo-em structure of alpha-synuclein fibril polymorph 2B

Guerrero-Ferreira, R., Taylor, N.M.I., Arteni, A.A., Melki, R., Meier, B.H., Bockmann, A., Bousset, L., Stahlberg, H.

(2019) Elife 8:

Released	2019-12-18
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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6SSX \| pdb_00006ssx	Download File View File

cryo-em structure of alpha-synuclein fibril polymorph 2A

Guerrero-Ferreira, R., Taylor, N.M.I., Arteni, A.A., Melki, R., Meier, B.H., Bockmann, A., Bousset, L., Stahlberg, H.

(2019) Elife 8:

Released	2019-12-18
Method	ELECTRON MICROSCOPY 2.98 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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6VMS \| pdb_00006vms	Download File View File

Structure of a D2 dopamine receptor-G-protein complex in a lipid membrane

Yin, J., Chen, K.M., Clark, M.J., Hijazi, M., Kumari, P., Bai, X., Sunahara, R.K., Barth, P., Rosenbaum, D.M.

(2020) Nature 584: 125-129

Released	2020-06-17
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Rattus norvegicus Tequatrovirus T4
Macromolecule	Endolysin,D(2) dopamine receptor,D(2) dopamine receptor (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	08Y

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7EP8 \| pdb_00007ep8	Download File View File

Crystal structure of PCNA from Neurospora crassa

Sundaram, R., Vasudevan, D.

(2021) J Biological Chem 297: 100911-100911

Released	2021-06-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Neurospora crassa OR74A
Macromolecule	Proliferating cell nuclear antigen (protein)

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7QCX \| pdb_00007qcx	Download File View File

Two-state liquid NMR Structure of a PDZ2 Domain from hPTP1E, apo form

Ashkinadze, D., Kadavath, H., Chi, C., Friedmann, M., Strotz, D., Kumari, P., Minges, M., Cadalbert, R., Koenigl, S., Guentert, P., Voegeli, B., Riek, R.

(2022) Nat Commun 13: 6232-6232

Released	2022-09-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 13 (protein)

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7QCY \| pdb_00007qcy	Download File View File

Two-state liquid NMR Structure of a PDZ2 Domain from hPTP1E, complexed with RA-GEF2 peptide

Ashkinadze, D., Kadavath, H., Chi, C., Friedmann, M., Strotz, D., Kumari, P., Minges, M., Cadalbert, R., Koenigl, S., Guentert, P., Voegeli, B., Riek, R.

(2022) Nat Commun 13: 6232-6232

Released	2022-09-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 13 (protein)

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7WME \| pdb_00007wme	Download File View File

Crystal Structure of the catalytic domain of At-HIGLE

Verma, P., Kumari, P., Negi, S., Yadav, G., Gaur, V.

(2022) Nucleic Acids Res 50: 4630-4646

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	Structure-specific endonuclease subunit SLX1 homolog (protein)
Unique Ligands	CA

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8EIT \| pdb_00008eit	Download File View File

Structure of FFAR1-Gq complex bound to DHA

Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.

(2023) Proc Natl Acad Sci U S A 120: e2219569120-e2219569120

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	A modified Guanine nucleotide-binding protein G(q) subunit alpha (protein) Free fatty acid receptor 1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) scFv16 (protein)
Unique Ligands	HXA

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8EJC \| pdb_00008ejc	Download File View File

Structure of FFAR1-Gq complex bound to TAK-875

Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.

(2023) Proc Natl Acad Sci U S A 120: e2219569120-e2219569120

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	A modified Guanine nucleotide-binding protein G(q) subunit alpha (protein) Free fatty acid receptor 1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) scFv16 (protein)
Unique Ligands	2YB

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8EJK \| pdb_00008ejk	Download File View File

Structure of FFAR1-Gq complex bound to TAK-875 in a lipid nanodisc

Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.

(2023) Proc Natl Acad Sci U S A 120: e2219569120-e2219569120

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	A modified Guanine nucleotide-binding protein G(q) subunit alpha (protein) Free fatty acid receptor 1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) scFv16 (protein)
Unique Ligands	2YB

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8JPS \| pdb_00008jps	Download File View File

Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)

Banerjee, R., Khanppnavar, B., Maharana, J., Saha, S., Korkhov, V.M., Shukla, A.K.

(2024) Cell 187: 4751-4769.e25

Released	2024-07-31
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens
Macromolecule	Atypical chemokine receptor 1 (protein) C-C motif chemokine 7 (protein)

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9B9Y \| pdb_00009b9y	Download File View File

Structural mechanism of CB1R binding to peripheral and biased inverse agonists

Kumari, P., Dvoracsko, S., Enos, M.D., Ramesh, K., Lim, D., Hassan, S.A., Kunos, G., Iyer, M.R., Rosenbaum, D.M.

(2024) Nat Commun 15: 10694-10694

Released	2024-11-20
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Lama glama Pyrococcus abyssi GE5
Macromolecule	CNb36 (protein) Cannabinoid receptor 1,Glycogen synthase (protein)
Unique Ligands	7DY

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9B9Z \| pdb_00009b9z	Download File View File

Structural mechanism of CB1R binding to peripheral and biased inverse agonists

Kumari, P., Dvoracsko, S., Enos, M.D., Ramesh, K., Lim, D., Hassan, S.A., Kunos, G., Cinar, R., Iyer, M.R., Rosenbaum, D.M.

(2024) Nat Commun 15: 10694-10694

Released	2024-11-20
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Lama glama Pyrococcus abyssi GE5
Macromolecule	CNb36 (protein) Cannabinoid receptor 1,Glycogen synthase (protein)
Unique Ligands	A1AKO

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9BA0 \| pdb_00009ba0	Download File View File

Structural mechanism of CB1R binding to peripheral and biased inverse agonists

Kumari, P., Dvoracsko, S., Enos, M.D., Ramesh, K., Lim, D., Hassan, S.A., Kunos, G., Cinar, R., Iyer, M.R., Rosenbaum, D.M.

(2024) Nat Commun 15: 10694-10694

Released	2024-11-20
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Homo sapiens Lama glama Pyrococcus abyssi GE5
Macromolecule	CNb36 (protein) Cannabinoid receptor 1,Glycogen synthase (protein)
Unique Ligands	A1AKN

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2VKZ | pdb_00002vkz

5ZKK | pdb_00005zkk

5ZR2 | pdb_00005zr2

6FPT | pdb_00006fpt

6FQ3 | pdb_00006fq3

6FQL | pdb_00006fql

6LE1 | pdb_00006le1

6M1X | pdb_00006m1x

6RT0 | pdb_00006rt0

6RTB | pdb_00006rtb

6SST | pdb_00006sst

6SSX | pdb_00006ssx

6VMS | pdb_00006vms

7EP8 | pdb_00007ep8

7QCX | pdb_00007qcx

7QCY | pdb_00007qcy

7WME | pdb_00007wme

8EIT | pdb_00008eit

8EJC | pdb_00008ejc

8EJK | pdb_00008ejk

8JPS | pdb_00008jps

9B9Y | pdb_00009b9y

9B9Z | pdb_00009b9z

9BA0 | pdb_00009ba0