RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Lee, J.H."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 431 Structures.

Refinements

Structure Determination Methodology

experimental (431)

Scientific Name of Source Organism

	Homo sapiens (100)
	Mus musculus (19)
	Human immunodeficiency virus 1 (15)
	synthetic construct (14)
	Trypanosoma brucei (11)
	Colwellia psychrerythraea 34H (10)
	Helicobacter pylori (10)
	Rattus norvegicus (10)
	Staphylococcus aureus (10)
	Halorhodospira halophila (9)

More...

Taxonomy

	Eukaryota (205)
	Bacteria (200)
	Riboviria (40)
	other sequences (15)
	Archaea (8)
	unclassified bacterial viruses (4)
	Eukaryota (eukaryotes) (2)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (391)
	ELECTRON MICROSCOPY (25)
	SOLUTION NMR (15)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (425)
	DNA (7)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (129)
	2.0 - 2.5 (127)
	2.5 - 3.0 (84)
	3.0 - 3.5 (41)
	3.5 - 4.0 (6)
	4.0 - 4.5 (10)
	> 4.5 (4)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (10)
	2005 - 2009 (73)
	2010 - 2014 (95)
	2015 - 2019 (114)
	2020 - 2024 (133)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (81)
	Oxidoreductases (56)
	Transferases (49)
	Lyases (10)
	Isomerases (8)
	Ligases (9)

Membrane Protein Annotation

	MemProtMD (8)
	PDBTM (8)
	OPM (2)

Symmetry Type

	Asymmetric (222)
	Cyclic (144)
	Dihedral (59)
	Octahedral (11)
	Tetrahedral (3)

SCOP Classification

	All beta proteins (47)
	Alpha and beta proteins (a/b) (52)
	All alpha proteins (40)
	Alpha and beta proteins (a+b) (61)
	Artifacts (35)
	Multi-domain proteins (alpha and beta) (11)
	Coiled coil proteins (4)
	Small proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 431 Structures

Page 1 of 18

Sort by

Explore in 3D

1CFL \| pdb_00001cfl	Download File View File

DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT

Lee, J.-H., Hwang, G.-S., Choi, B.-S.

(1999) Proc Natl Acad Sci U S A 96: 6632-6636

Released	1999-05-28
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPCPAP(64T)PTPAPCPGPC)-3') (nucleic acid) DNA (5'-D(GPCPGPTPGPAPTPGPCPG)-3') (nucleic acid)

Explore in 3D

1CQ0 \| pdb_00001cq0	Download File View File

SOLUTION STRUCTURE OF A HUMAN HYPOCRETIN-2/OREXIN-B'SOLUTION STRUCTURE OF A HUMAN HYPOCRETIN-2/OREXIN-B '

Lee, K.-H., Bang, E.J., Chae, K.-J., Lee, D.W., Lee, W.

(1999) Eur J Biochem 266: 831-839

Released	2000-01-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (NEW HYPOTHALAMIC NEUROPEPTIDE/OREXIN-B28) (protein)

Explore in 3D

1HOX \| pdb_00001hox	Download File View File

CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH FRUCTOSE-6-PHOSPHATE

Jeffrey, C.J., Lee, J.H., Chang, K.Z., Patel, V.

(2001) Biochemistry 40: 7799-7805

Released	2001-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PHOSPHOGLUCOSE ISOMERASE (protein)
Unique Ligands	F6P

Explore in 3D

1JO7 \| pdb_00001jo7	Download File View File

Solution Structure of Influenza A Virus Promoter

Bae, S.-H., Cheong, H.-K., Lee, J.-H., Cheong, C., Kainosho, M., Choi, B.-S.

(2001) Proc Natl Acad Sci U S A 98: 10602-10607

Released	2001-09-19
Method	SOLUTION NMR
Macromolecule	Influenza A virus promoter RNA (nucleic acid)

Explore in 3D

1MNL \| pdb_00001mnl	Download File View File

HIGH-RESOLUTION SOLUTION STRUCTURE OF A SWEET PROTEIN SINGLE-CHAIN MONELLIN (SCM) DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND DYNAMICAL SIMULATED ANNEALING CALCULATIONS, 21 STRUCTURES

Lee, S.-Y., Lee, J.-H., Chang, H.-J., Jo, J.-M., Jung, J.-W., Lee, W.

(1999) Biochemistry 38: 2340-2346

Released	1999-06-08
Method	SOLUTION NMR
Organisms	Dioscoreophyllum cumminsii
Macromolecule	MONELLIN (protein)

Explore in 3D

1N7E \| pdb_00001n7e	Download File View File

Crystal structure of the sixth PDZ domain of GRIP1

Im, Y.J., Park, S.H., Rho, S.H., Lee, J.H., Kang, G.B., Sheng, M., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 8501-8507

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	AMPA receptor interacting protein GRIP (protein)

Explore in 3D

1N7F \| pdb_00001n7f	Download File View File

Crystal structure of the sixth PDZ domain of GRIP1 in complex with liprin C-terminal peptide

Im, Y.J., Park, S.H., Rho, S.H., Lee, J.H., Kang, G.B., Sheng, M., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 8501-8507

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	8-mer peptide from interacting protein (liprin) (protein) AMPA receptor interacting protein GRIP (protein)

Explore in 3D

1PIB \| pdb_00001pib	Download File View File

Solution structure of DNA containing CPD opposited by GA

Lee, J.H., Park, C.J., Shin, J.S., Choi, B.S.

(2004) Nucleic Acids Res 32: 2474-2481

Released	2004-05-18
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPAPTPTPAPCPGPC)-3' (nucleic acid) 5'-D(GPCPGPTPGPAPTPGPCPG)-3' (nucleic acid)

Explore in 3D

1Q3O \| pdb_00001q3o	Download File View File

Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization

Im, Y.J., Lee, J.H., Park, S.H., Park, S.J., Rho, S.-H., Kang, G.B., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 48099-48104

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Shank1 (protein)
Unique Ligands	BR

Explore in 3D

1Q3P \| pdb_00001q3p	Download File View File

Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization

Im, Y.J., Lee, J.H., Park, S.H., Park, S.J., Rho, S.-H., Kang, G.B., Kim, E., Eom, S.H.

(2003) J Biological Chem 278: 48099-48104

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rattus norvegicus
Macromolecule	C-terminal hexapeptide from Guanylate kinase-associated protein (protein) Shank1 (protein)

Explore in 3D

1SNH \| pdb_00001snh	Download File View File

Solution structure of the DNA Decamer Duplex Containing Double TG Mismatches of Cis-syn Cyclobutane Pyrimidine Dimer

Lee, J.H., Park, C.J., Shin, J.S., Ikegami, T., Akutsu, H., Choi, B.S.

(2004) Nucleic Acids Res 32: 2474-2481

Released	2004-05-18
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPAPTPTPAPCPGPC)-3' (nucleic acid) 5'-D(GPCPGPTPGPGPTPGPCPG)-3' (nucleic acid)

Explore in 3D

1WKO \| pdb_00001wko	Download File View File

Terminal flower 1 (tfl1) from arabidopsis thaliana

Miller, D., Banfield, M.J., Winter, V.J., Brady, R.L.

(2006) EMBO J 25: 605-614

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	TERMINAL FLOWER 1 protein (protein)

Explore in 3D

1WKP \| pdb_00001wkp	Download File View File

Flowering locus t (ft) from arabidopsis thaliana

Miller, D., Banfield, M.J., Winter, V.J., Brady, R.L.

(2006) EMBO J 25: 605-614

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	FLOWERING LOCUS T protein (protein)
Unique Ligands	SO4

Explore in 3D

1X3W \| pdb_00001x3w	Download File View File

Structure of a peptide:N-glycanase-Rad23 complex

Lee, J.-H., Choi, J.M., Lee, C., Yi, K.J., Cho, Y.

(2005) Proc Natl Acad Sci U S A 102: 9144-9149

Released	2005-06-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UV excision repair protein RAD23 (protein) peptide:N-glycanase (protein)
Unique Ligands	ZN
Unique branched monosaccharides	FRU, GLC

Explore in 3D

1X3Z \| pdb_00001x3z	Download File View File

Structure of a peptide:N-glycanase-Rad23 complex

Lee, J.-H., Choi, J.M., Lee, C., Yi, K.J., Cho, Y.

(2005) Proc Natl Acad Sci U S A 102: 9144-9149

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UV excision repair protein RAD23 (protein) peptide PHQ-Val-Ala-Asp-CF0 (protein) peptide: N-glycanase (protein)
Unique Ligands	ZN
Unique branched monosaccharides	FRU, GLC

Explore in 3D

1XHK \| pdb_00001xhk	Download File View File

Crystal structure of M. jannaschii Lon proteolytic domain

Im, Y.J., Na, Y., Kang, G.B., Rho, S.-H., Kim, M.-K., Lee, J.H., Chung, C.H., Eom, S.H.

(2004) J Biological Chem 279: 53451-53457

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Putative protease La homolog (protein)
Unique Ligands	MES, SO4

Explore in 3D

1XNG \| pdb_00001xng	Download File View File

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B., Kim, Y.S., Im, Y.J., Rho, S.H., Lee, J.H., Eom, S.H.

(2005) Proteins 58: 985-988

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Helicobacter pylori
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)
Unique Ligands	ATP, DND, MG

Explore in 3D

1XNH \| pdb_00001xnh	Download File View File

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B., Kim, Y.S., Im, Y.J., Rho, S.H., Lee, J.H., Eom, S.H.

(2005) Proteins 58: 985-988

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)

Explore in 3D

1XTB \| pdb_00001xtb	Download File View File

Crystal Structure of Rabbit Phosphoglucose Isomerase Complexed with Sorbitol-6-Phosphate

Lee, J.H., Jeffery, C.J.

(2005) Protein Sci 14: 727-734

Released	2005-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	phosphoglucose isomerase (protein)
Unique Ligands	S6P

Explore in 3D

1YNX \| pdb_00001ynx	Download File View File

Solution structure of DNA binding domain A (DBD-A) of S.cerevisiae Replication Protein A (RPA)

Park, C.J., Lee, J.H., Choi, B.S.

(2005) Nucleic Acids Res 33: 4172-4181

Released	2006-01-10
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Replication factor-A protein 1 (protein)

Explore in 3D

1ZKJ \| pdb_00001zkj	Download File View File

Structural Basis for the Extended Substrate Spectrum of CMY-10, a Plasmid-Encoded Class C beta-lactamase

Cha, S.S., Jung, H.I., An, Y.J., Lee, S.H.

(2006) Mol Microbiol 60: 907-916

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Klebsiella aerogenes
Macromolecule	extended-spectrum beta-lactamase (protein)
Unique Ligands	ACY, ZN

Explore in 3D

2AZ0 \| pdb_00002az0	Download File View File

Flock House virus B2-dsRNA Complex (P212121)

Chao, J.A., Lee, J.H., Chapados, B.R., Debler, E.W., Schneemann, A., Williamson, J.R.

(2005) Nat Struct Mol Biol 12: 952-957

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Flock House virus
Macromolecule	B2 protein (protein) 5'-R(GPCPAP(5BU)PGPGPAPCPGPCPGP(5BU)PCPCPAP(5BU)PGPC)-3' (nucleic acid)

Explore in 3D

2AZ2 \| pdb_00002az2	Download File View File

Flock House virus B2-dsRNA Complex (P4122)

Chao, J.A., Lee, J.H., Chapados, B.R., Debler, E.W., Schneemann, A., Williamson, J.R.

(2005) Nat Struct Mol Biol 12: 952-957

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Flock House virus
Macromolecule	B2 protein (protein) 5'-R(GPCPAP(5BU)PGPGPAPCPGPCPGP(5BU)PCPCPAP(5BU)PGPC)-3' (nucleic acid)

Explore in 3D

2B7N \| pdb_00002b7n	Download File View File

Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori

Kim, M.K., Im, Y.J., Lee, J.H., Eom, S.H.

(2006) Proteins 63: 252-255

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	Probable nicotinate-nucleotide pyrophosphorylase (protein)
Unique Ligands	NTM, SO4

Explore in 3D

2B7P \| pdb_00002b7p	Download File View File

Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori with phthalic acid

Kim, M.K., Im, Y.J., Lee, J.H., Eom, S.H.

(2006) Proteins 63: 252-255

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Helicobacter pylori
Macromolecule	Probable nicotinate-nucleotide pyrophosphorylase (protein)
Unique Ligands	PHT, SO4

1 to 25 of 431 Structures

Page 1 of 18

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CFL | pdb_00001cfl

1CQ0 | pdb_00001cq0

1HOX | pdb_00001hox

1JO7 | pdb_00001jo7

1MNL | pdb_00001mnl

1N7E | pdb_00001n7e

1N7F | pdb_00001n7f

1PIB | pdb_00001pib

1Q3O | pdb_00001q3o

1Q3P | pdb_00001q3p

1SNH | pdb_00001snh

1WKO | pdb_00001wko

1WKP | pdb_00001wkp

1X3W | pdb_00001x3w

1X3Z | pdb_00001x3z

1XHK | pdb_00001xhk

1XNG | pdb_00001xng

1XNH | pdb_00001xnh

1XTB | pdb_00001xtb

1YNX | pdb_00001ynx

1ZKJ | pdb_00001zkj

2AZ0 | pdb_00002az0

2AZ2 | pdb_00002az2

2B7N | pdb_00002b7n

2B7P | pdb_00002b7p