RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Lee, R.E."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 135 Structures.

Refinements

Structure Determination Methodology

experimental (135)

Scientific Name of Source Organism

	Homo sapiens (44)
	Bacillus anthracis str. A2012 (28)
	Escherichia coli K-12 (8)
	Mycobacterium tuberculosis (8)
	Staphylococcus aureus subsp. aureus NCTC 8325 (8)
	Aspergillus fumigatus Af293 (5)
	Candida albicans SC5314 (5)
	Bacillus anthracis (4)
	Escherichia coli (4)
	Yersinia pestis (4)

More...

Taxonomy

	Bacteria (78)
	Eukaryota (57)
	other sequences (4)
	Duplodnaviria (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (134)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (135)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (43)
	2.0 - 2.5 (58)
	2.5 - 3.0 (22)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (21)
	2010 - 2014 (33)
	2015 - 2019 (32)
	2020 - 2024 (41)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (93)
	Hydrolases (9)
	Ligases (4)
	Oxidoreductases (3)
	Isomerases (1)
	Lyases (1)

Symmetry Type

	Cyclic (85)
	Asymmetric (47)
	Dihedral (23)

SCOP Classification

	Alpha and beta proteins (a/b) (61)
	Artifacts (20)
	All alpha proteins (5)
	Alpha and beta proteins (a+b) (8)
	All beta proteins (1)

AllSelected

1 to 25 of 135 Structures

Page 1 of 6

Sort by

Explore in 3D

1PM7 \| pdb_00001pm7	Download File View File

RmlC (dTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE)STRUCTURE FROM MYCOBACTERIUM TUBERCULOSIS AND INHIBITOR DESIGN. THE APO STRUCTURE.

Dong, C., Naismith, J.H., TB Structural Genomics Consortium (TBSGC)

(2003) Bioorg Med Chem Lett 13: 3227-3230

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	RFBC (protein)
Unique Ligands	ACT, GOL

Explore in 3D

1SQ5 \| pdb_00001sq5	Download File View File

Crystal Structure of E. coli Pantothenate kinase

Ivey, R.A., Zhang, Y.-M., Virga, K.G., Hevener, K., Lee, R.E., Rock, C.O., Jackowski, S., Park, H.-W.

(2004) J Biological Chem 279: 35622-35629

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Pantothenate kinase (protein)
Unique Ligands	ADP, PAU

Explore in 3D

1TWS \| pdb_00001tws	Download File View File

Dihydropteroate Synthetase From Bacillus anthracis

Babaoglu, K., Qi, J., Lee, R.E., White, S.W.

(2004) Structure 12: 1705-1717

Released	2004-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	DHPS, Dihydropteroate synthase (protein)
Unique Ligands	SO4

Explore in 3D

1TWW \| pdb_00001tww	Download File View File

Dihydropteroate Synthetase, With Bound Substrate Analogue PtPP, From Bacillus anthracis

Babaoglu, K., Qi, J., Lee, R.E., White, S.W.

(2004) Structure 12: 1705-1717

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	DHPS, Dihydropteroate synthase (protein)
Unique Ligands	HH2, SO4

Explore in 3D

1TWZ \| pdb_00001twz	Download File View File

Dihydropteroate Synthetase, With Bound Substrate Analogue PtP, From Bacillus anthracis

Babaoglu, K., Qi, J., Lee, R.L., White, S.W.

(2004) Structure 12: 1705-1717

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	DHPS, Dihydropteroate synthase (protein)
Unique Ligands	PMM, SO4

Explore in 3D

1TX0 \| pdb_00001tx0	Download File View File

Dihydropteroate Synthetase, With Bound Product Analogue Pteroic Acid, From Bacillus anthracis

Babaoglu, K., Qi, J., Lee, R.E., White, S.W.

(2004) Structure 12: 1705-1717

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	DHPS, Dihydropteroate synthase (protein)
Unique Ligands	PT1, SO4

Explore in 3D

1TX2 \| pdb_00001tx2	Download File View File

Dihydropteroate Synthetase, With Bound Inhibitor MANIC, From Bacillus anthracis

Babaoglu, K., Qi, J., Lee, R.E., White, S.W.

(2004) Structure 12: 1705-1717

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	DHPS, Dihydropteroate synthase (protein)
Unique Ligands	680, SO4

Explore in 3D

2QK8 \| pdb_00002qk8	Download File View File

Crystal structure of the anthrax drug target, Bacillus anthracis dihydrofolate reductase

Bennett, B.C., Xu, H., Simmerman, R.F., Lee, R.E., Dealwis, C.G.

(2007) J Med Chem 50: 4374-4381

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis str. Sterne
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	MTX

Explore in 3D

3BV0 \| pdb_00003bv0	Download File View File

Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Mycobacterium Tuberculosis

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	PLP

Explore in 3D

3DOD \| pdb_00003dod	Download File View File

Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	PLP

Explore in 3D

3DRD \| pdb_00003drd	Download File View File

Crystal Structure of 7,8 Diaminopelargonic Acid Synthase Apoenzyme in Bacillus subtilis

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Bacillus subtilis
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)

Explore in 3D

3DU4 \| pdb_00003du4	Download File View File

Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8-diaminopelargonic acid synthase in bacillus subtilis

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	KAP, PLP

Explore in 3D

3FGN \| pdb_00003fgn	Download File View File

Crystal structure of dethiobiotin synthetase in Mycobacterium tuberculosis

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Dethiobiotin synthetase (protein)

Explore in 3D

3FMF \| pdb_00003fmf	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase complexed with 7,8 diaminopelargonic acid carbamate

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Dethiobiotin synthetase (protein)
Unique Ligands	DSD

Explore in 3D

3FMI \| pdb_00003fmi	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase complexed with 7-Keto 8-aminopelargonic acid

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Dethiobiotin synthetase (protein)
Unique Ligands	KAP, SO4

Explore in 3D

3FPA \| pdb_00003fpa	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase complexed with dethiobiotin and phosphate

Dey, S., Sacchettini, J.C.

(2010) Biochemistry 49: 6746-6760

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Dethiobiotin synthetase (protein)
Unique Ligands	DTB, MG, PO4

Explore in 3D

3H21 \| pdb_00003h21	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B52, SO4

Explore in 3D

3H22 \| pdb_00003h22	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B53, SO4

Explore in 3D

3H23 \| pdb_00003h23	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B54, SO4

Explore in 3D

3H24 \| pdb_00003h24	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B55, SO4

Explore in 3D

3H26 \| pdb_00003h26	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B56, SO4

Explore in 3D

3H2A \| pdb_00003h2a	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B57, SO4

Explore in 3D

3H2C \| pdb_00003h2c	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B58, SO4

Explore in 3D

3H2E \| pdb_00003h2e	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B59, SO4

Explore in 3D

3H2F \| pdb_00003h2f	Download File View File

Structural Studies of Pterin-Based Inhibitors of Dihydropteroate Synthase

Yun, M.-K., White, S.W.

(2010) J Med Chem 53: 166-177

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis str. A2012
Macromolecule	Dihydropteroate synthase (protein)
Unique Ligands	B60, SO4

1 to 25 of 135 Structures

Page 1 of 6

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1PM7 | pdb_00001pm7

1SQ5 | pdb_00001sq5

1TWS | pdb_00001tws

1TWW | pdb_00001tww

1TWZ | pdb_00001twz

1TX0 | pdb_00001tx0

1TX2 | pdb_00001tx2

2QK8 | pdb_00002qk8

3BV0 | pdb_00003bv0

3DOD | pdb_00003dod

3DRD | pdb_00003drd

3DU4 | pdb_00003du4

3FGN | pdb_00003fgn

3FMF | pdb_00003fmf

3FMI | pdb_00003fmi

3FPA | pdb_00003fpa

3H21 | pdb_00003h21

3H22 | pdb_00003h22

3H23 | pdb_00003h23

3H24 | pdb_00003h24

3H26 | pdb_00003h26

3H2A | pdb_00003h2a

3H2C | pdb_00003h2c

3H2E | pdb_00003h2e

3H2F | pdb_00003h2f