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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lei, X."

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Search Summary

This query matches 81 Structures.

Refinements

Structure Determination Methodology

experimental (81)

Scientific Name of Source Organism

	Homo sapiens (36)
	Klebsiella pneumoniae (12)
	synthetic construct (8)
	Enterovirus A71 (4)
	Pseudomonas aeruginosa PAO1 (4)
	Bacteroides thetaiotaomicron (3)
	Morus alba (3)
	Mycolicibacterium vanbaalenii PYR-1 (3)
	Rattus norvegicus (3)
	Actinoalloteichus hymeniacidonis (2)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (28)
	other sequences (8)
	Riboviria (5)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (61)
	ELECTRON MICROSCOPY (20)

Polymer Entity Type

	Protein (81)
	DNA (5)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (13)
	1.5 - 2.0 (13)
	2.0 - 2.5 (22)
	2.5 - 3.0 (15)
	3.0 - 3.5 (9)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (13)
	2020 - 2024 (59)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (11)
	Oxidoreductases (5)

Membrane Protein Annotation

	PDBTM (17)
	MemProtMD (11)
	mpstruc (8)
	OPM (6)

Symmetry Type

	Asymmetric (48)
	Cyclic (33)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	All beta proteins (4)
	Artifacts (2)

AllSelected

1 to 25 of 81 Structures

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3LFM \| pdb_00003lfm	Download File View File

Crystal structure of the fat mass and obesity associated (FTO) protein reveals basis for its substrate specificity

Chai, J., Han, Z.

(2010) Nature 464: 1205-1209

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Protein fto (protein)
Unique Ligands	3DT, FE2, OGA

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3MU6 \| pdb_00003mu6	Download File View File

Inhibiting the Binding of Class IIa Histone Deacetylases to Myocyte Enhancer Factor-2 by Small Molecules

Jayathilaka, N., Han, A., Gaffney, K., Dey, R., He, J., Ye, J., Gao, T., Petasis, N.A., Chen, L.

(2012) Nucleic Acids Res 40: 5378-5388

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.434 Å
Organisms	Homo sapiens
Macromolecule	Myocyte-specific enhancer factor 2A (protein) DNA (5'-D(APAPAPGPCPTPAPTPTPAPTPTPAPGPCPTPT)-3') (nucleic acid) DNA (5'-D(TPAPAPGPCPTPAPAPTPAPAPTPAPGPCPTPT)-3') (nucleic acid)
Unique Ligands	BXL

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3OSY \| pdb_00003osy	Download File View File

Human enterovirus 71 3C protease

Wang, J., Fan, T., Wang, M., Cui, S.

(2011) J Mol Biology 408: 449-461

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.9923 Å
Organisms	Enterovirus A71
Macromolecule	3C protease (protein)

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3QZQ \| pdb_00003qzq	Download File View File

Human enterovirus 71 3C protease mutant E71D in complex with rupintrivir

Wang, J., Fan, T., Yao, X., Wu, Z., Guo, L., Lei, X., Wang, J., Wang, M., Jin, Q., Cui, S.

(2011) J Virol 85: 10021-10030

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.7001 Å
Organisms	Enterovirus A71
Macromolecule	3C protein (protein)
Unique Ligands	AG7

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3QZR \| pdb_00003qzr	Download File View File

Human enterovirus 71 3C protease mutant E71A in complex with rupintrivir

Wang, J., Fan, T., Yao, X., Wu, Z., Guo, L., Lei, X., Wang, J., Wang, M., Jin, Q., Cui, S.

(2011) J Virol 85: 10021-10030

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.039 Å
Organisms	Enterovirus A71
Macromolecule	3C protein (protein)
Unique Ligands	AG7, EDO

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3R0F \| pdb_00003r0f	Download File View File

Human enterovirus 71 3C protease mutant H133G in complex with rupintrivir

Wang, J., Fan, T., Yao, X., Wu, Z., Guo, L., Lei, X., Wang, J., Wang, M., Jin, Q., Cui, S.

(2011) J Virol 85: 10021-10030

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.3083 Å
Organisms	Enterovirus A71
Macromolecule	3C protein (protein)
Unique Ligands	AG7, EDO

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4XU4 \| pdb_00004xu4	Download File View File

Crystal structure of a mycobacterial Insig homolog MvINS from Mycobacterium vanbaalenii at 1.9A resolution

Ren, R.B., Wu, J.P., Yan, C.Y., He, Y., Yan, N.

(2015) Science 349: 187-191

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Mycolicibacterium vanbaalenii PYR-1
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	BNG, DDQ

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4XU5 \| pdb_00004xu5	Download File View File

Crystal structure of MvINS bound to a bromine-derived 14C Diacylglycerol (DAG) at 2.1A resolution

Ren, R.B., Wu, J.P., Yan, C.Y., He, Y., Yan, N.

(2015) Science 349: 187-191

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycolicibacterium vanbaalenii PYR-1
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	BOG, D10, LBR

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4XU6 \| pdb_00004xu6	Download File View File

Crystal structure of cross-linked MvINS R77C trimer at 1.9A resolution

Ren, R.B., Wu, J.P., Yan, C.Y., He, Y., Yan, N.

(2015) Science 349: 187-191

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Mycolicibacterium vanbaalenii PYR-1
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	BOG, TDA

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5ZIO \| pdb_00005zio	Download File View File

Crystal structure of NDM-1 in complex with L-captopril

Zhang, H., Hao, Q.

(2020) Bioorg Med Chem 29:

Released	2019-03-20
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	X8Z, ZN

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5ZJ2 \| pdb_00005zj2	Download File View File

Crystal structure of NDM-1 in complex with D-captopril

Zhang, H., Hao, Q.

(2020) Bioorg Med Chem 29:

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	MCO, ZN

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6BYY \| pdb_00006byy	Download File View File

MEF2 CHIMERA/DNA Complex

Lei, X., Chen, L.

(2018) J Mol Biology 430: 1157-1172

Released	2018-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	MEF2 CHIMERA (protein) DNA (5'-D(PAPAPCPTPAPTPTPTPAPTPAPAPGPA)-3') (nucleic acid) DNA (5'-D(PTPTPCPTPTPAPTPAPAPAPTPAPGPTP*T)-3') (nucleic acid)
Unique Ligands	1PG, TCE

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6BZ1 \| pdb_00006bz1	Download File View File

MEF2 Chimera D83V mutant/DNA complex

Lei, X., Chen, L.

(2018) J Mol Biology 430: 1157-1172

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	MEF2 CHIMERA (protein) DNA (5'-D(PAPAPCPTPAPTPTPTPAPTPAPAPGPA)-3') (nucleic acid) DNA (5'-D(PTPTPCPTPTPAPTPAPAPAPTPAPGPTP*T)-3') (nucleic acid)

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6C9L \| pdb_00006c9l	Download File View File

MEF2B Apo Protein Structure

Lei, X., Chen, L.

(2018) Biochemistry 57: 4047-4051

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Myocyte-specific enhancer factor 2B (protein)

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6JQH \| pdb_00006jqh	Download File View File

Crystal structure of MaDA

Du, X.X., Lei, X.G.

(2020) Nat Chem 12: 620-628

Released	2020-04-08
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Morus alba
Macromolecule	MaDA (protein)
Unique Ligands	FAD

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6K0J \| pdb_00006k0j	Download File View File

The co-crystal structure of DYRK2 with a small molecule inhibitor

Tiantian, W., Xiao, J.

(2019) Proc Natl Acad Sci U S A 116: 24881-24891

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.352 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity tyrosine-phosphorylation-regulated kinase 2 (protein)
Unique Ligands	CQO

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6LIP \| pdb_00006lip	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss0218

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EEL, ZN

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6LIZ \| pdb_00006liz	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss02120

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EEO, ZN

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6LJ0 \| pdb_00006lj0	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss02122

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EER, ZN

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6LJ1 \| pdb_00006lj1	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss02127 monomer

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.151 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EEX, ZN

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6LJ2 \| pdb_00006lj2	Download File View File

Crystal structure of NDM-1 in complex with heterodimer of D-captopril derivative wss02127 stereoisomer

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EEX, EKX, OH, ZN

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6LJ4 \| pdb_00006lj4	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss04146

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EF9, ZN

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6LJ5 \| pdb_00006lj5	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss04145

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, EF0, ZN

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6LJ6 \| pdb_00006lj6	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss05008

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EFF, ZN

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6LJ7 \| pdb_00006lj7	Download File View File

Crystal structure of NDM-1 in complex with D-captopril derivative wss05010

Zhang, H., Ma, G.

(2020) Bioorg Med Chem 29: 115902-115902

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EFR, ZN

1 to 25 of 81 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3LFM | pdb_00003lfm

3MU6 | pdb_00003mu6

3OSY | pdb_00003osy

3QZQ | pdb_00003qzq

3QZR | pdb_00003qzr

3R0F | pdb_00003r0f

4XU4 | pdb_00004xu4

4XU5 | pdb_00004xu5

4XU6 | pdb_00004xu6

5ZIO | pdb_00005zio

5ZJ2 | pdb_00005zj2

6BYY | pdb_00006byy

6BZ1 | pdb_00006bz1

6C9L | pdb_00006c9l

6JQH | pdb_00006jqh

6K0J | pdb_00006k0j

6LIP | pdb_00006lip

6LIZ | pdb_00006liz

6LJ0 | pdb_00006lj0

6LJ1 | pdb_00006lj1

6LJ2 | pdb_00006lj2

6LJ4 | pdb_00006lj4

6LJ5 | pdb_00006lj5

6LJ6 | pdb_00006lj6

6LJ7 | pdb_00006lj7