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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, P.Y."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Roseovarius nubinhibens ISM (5)
	Acinetobacter bereziniae NIPH 3 (3)
	Chitinophaga sp. MD30 (3)
	uncultured bacterium (3)
	Algibacter sp. L4_22 (2)
	Psychromonas sp. (2)
	Vibrio variabilis (2)
	Arcticibacterium luteifluviistationis (1)
	Myroides profundi (1)
	Paraglaciecola chathamensis (1)

More...

Taxonomy

	Bacteria (25)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (11)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (13)
	2020 - 2024 (12)

Enzyme Classification Name

	Oxidoreductases (7)
	Hydrolases (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (12)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Artifacts (1)

AllSelected

1 to 25 of 26 Structures

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4Q05 \| pdb_00004q05	Download File View File

Crystal structure of an esterase E25

Li, P.Y., Li, C.Y., Zhang, Y.Z.

(2014) J Biological Chem 289: 19031-19041

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	uncultured bacterium
Macromolecule	esterase E25 (protein)
Unique Ligands	NA

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4XVC \| pdb_00004xvc	Download File View File

Crystal structure of an esterase from the bacterial hormone-sensitive lipase (HSL) family

Zhang, Y., Li, P.

(2015) J Biological Chem 290: 11188-11198

Released	2015-03-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	environmental samples
Macromolecule	Esterase E40 (protein)
Unique Ligands	PMS

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5GKD \| pdb_00005gkd	Download File View File

Structure of PL6 family alginate lyase AlyGC

Zhang, Y.Z., Wang, P., Xu, F.

(2017) J Biological Chem 292: 4457-4468

Released	2017-02-08
Method	X-RAY DIFFRACTION 2.194 Å
Organisms	Paraglaciecola chathamensis
Macromolecule	AlyGC (protein)
Unique Ligands	CA, CO3, GOL, PO4

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5GKQ \| pdb_00005gkq	Download File View File

Structure of PL6 family alginate lyase AlyGC mutant-R241A

Zhang, Y.Z., Wang, P., Xu, F.

(2017) J Biological Chem 292: 4457-4468

Released	2017-02-08
Method	X-RAY DIFFRACTION 2.565 Å
Organisms	Paraglaciecola chathamensis S18K6
Macromolecule	AlyGC mutant - R241A (protein)
Unique Ligands	CA
Unique branched monosaccharides	BEM

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5GMR \| pdb_00005gmr	Download File View File

Crystal structure of the mutant M3+S202W/I203F of the esterase E40

Zhang, Y.-Z., Li, P.-Y.

(2017) Appl Environ Microbiol 83:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	uncultured bacterium
Macromolecule	Esterase (protein)

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5GMS \| pdb_00005gms	Download File View File

Crystal structure of the mutant S202W/I203F of the esterase E40

Zhang, Y.-Z., Li, P.-Y.

(2017) Appl Environ Microbiol 83:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	uncultured bacterium
Macromolecule	Esterase (protein)

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5GSN \| pdb_00005gsn	Download File View File

Tmm in complex with methimazole

Zhang, Y.Z., Li, C.Y.

(2017) Mol Microbiol 103: 992-1003

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.203 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Flavin-containing monooxygenase (protein)
Unique Ligands	FAD, MMZ, NAP

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5IPY \| pdb_00005ipy	Download File View File

Crystal structure of WT RnTmm

Li, C.Y., Zhang, Y.Z.

(2017) Mol Microbiol 103: 992-1003

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Flavin-containing monooxygenase (protein)
Unique Ligands	FAD, NAP

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5IQ1 \| pdb_00005iq1	Download File View File

Crystal structure of RnTmm mutant Y207S

Li, C.Y., Zhang, Y.Z.

(2017) Mol Microbiol 103: 992-1003

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Flavin-containing monooxygenase (protein)
Unique Ligands	FAD, NAP

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5IQ4 \| pdb_00005iq4	Download File View File

Crystal structure of RnTmm mutant Y207S soaking

Zhang, Y.Z., Li, C.Y.

(2017) Mol Microbiol 103: 992-1003

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Flavin-containing monooxygenase (protein)
Unique Ligands	FAD, NAP

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5XKX \| pdb_00005xkx	Download File View File

Crystal structure of WT DddY

Li, C.Y., Zhang, Y.Z.

(2017) J Mol Biology 429: 3850-3862

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acinetobacter bereziniae NIPH 3
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACT, ZN

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5XKY \| pdb_00005xky	Download File View File

Crystal structure of DddY Se derivative

Li, C.Y., Zhang, Y.Z.

(2017) J Mol Biology 429: 3850-3862

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Acinetobacter bereziniae NIPH 3
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ZN

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5XZD \| pdb_00005xzd	Download File View File

Structure of acryloyl-CoA hydratase AcuH from Roseovarius nubinhibens ISM

Zhang, Y.Z., Wang, P., Cao, H.Y.

(2017) Front Microbiol 8: 2034-2034

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Enoyl-CoA hydratase (protein)
Unique Ligands	ACY

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5Y4K \| pdb_00005y4k	Download File View File

Crystal structure of DddY mutant Y260A

Zhang, Y.Z., Li, C.Y.

(2017) J Mol Biology 429: 3850-3862

Released	2017-11-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acinetobacter bereziniae NIPH 3
Macromolecule	DMSP lyase DddY (protein)
Unique Ligands	AKR, ZN

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6J75 \| pdb_00006j75	Download File View File

Structure of 3,6-anhydro-L-galactose Dehydrogenase

Li, P.Y., Wang, Y., Chen, X.L., Zhang, Y.Z.

(2020) J Mol Biology 432: 2186-2203

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	Vibrio variabilis
Macromolecule	Aldehyde dehydrogenase A (protein)

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6J76 \| pdb_00006j76	Download File View File

Structure of 3,6-anhydro-L-galactose Dehydrogenase in Complex with NAP

Li, P.Y., Wang, Y., Chen, X.L., Zhang, Y.Z.

(2020) J Mol Biology 432: 2186-2203

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.368 Å
Organisms	Vibrio variabilis
Macromolecule	Aldehyde dehydrogenase A (protein)
Unique Ligands	NAP

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6K7Z \| pdb_00006k7z	Download File View File

Crystal structure of a GH18 chitinase from Pseudoalteromonas aurantia

Wang, Y.J., Li, P.Y., Cao, H.Y., Chen, X.L., Zhang, Y.Z.

(2019) Front Microbiol 10: 2457-2457

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Pseudoalteromonas aurantia
Macromolecule	GH18 chiitnase (protein)

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6KBW \| pdb_00006kbw	Download File View File

Crystal structure of Tmm from Myroides profundi D25

Li, C.Y., Zhang, Y.Z.

(2021) Sci Adv 7:

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.686 Å
Organisms	Myroides profundi
Macromolecule	Trimethylamine monooxygenase (protein)
Unique Ligands	FAD, NAP

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6KCV \| pdb_00006kcv	Download File View File

Structure of alginate lyase Aly36B mutant K143A/Y185A in complex with alginate tetrasaccharide

Dong, F., Zhang, Y.Z., Chen, X.L.

(2019) J Mol Biology 431: 4897-4909

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.282 Å
Organisms	Chitinophaga sp. MD30
Macromolecule	Alginate lyase (protein)
Unique Ligands	CA
Unique branched monosaccharides	BEM

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6KCW \| pdb_00006kcw	Download File View File

Structure of alginate lyase Aly36B

Dong, F., Chen, X.L., Zhang, Y.Z.

(2019) J Mol Biology 431: 4897-4909

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Chitinophaga sp. MD30
Macromolecule	Alginate lyase (protein)
Unique Ligands	CA, PO4

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6KZK \| pdb_00006kzk	Download File View File

Structure of alginate lyase Aly36B mutant K143A/M171A in complex with alginate trisaccharide

Zhang, Y.Z., Dong, F., Chen, X.L.

(2019) J Mol Biology 431: 4897-4909

Released	2020-09-23
Method	X-RAY DIFFRACTION 2.789 Å
Organisms	Chitinophaga sp. MD30
Macromolecule	Alginate lyase (protein)
Unique Ligands	CA
Unique branched monosaccharides	BEM

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7C8F \| pdb_00007c8f	Download File View File

Structure of alginate lyase AlyC3 in complex with dimannuronate(2M)

Zhang, Y.Z., Xu, F., Chen, X.L., Wang, P.

(2020) J Biological Chem 295: 16380-16392

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.461 Å
Organisms	Psychromonas sp.
Macromolecule	H127A/Y244A mutant of alginate lyase AlyC3 in complex with dimannuronate (protein)
Unique Ligands	MLI
Unique branched monosaccharides	BEM

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7C8G \| pdb_00007c8g	Download File View File

Structure of alginate lyase AlyC3

Zhang, Y.Z., Xu, F., Chen, X.L., Wang, P.

(2020) J Biological Chem 295: 16380-16392

Released	2020-10-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Psychromonas sp.
Macromolecule	Alginate lyase AlyC3 (protein)
Unique Ligands	GOL, SIN

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7DDY \| pdb_00007ddy	Download File View File

Crystal structure of an acetyl xylan esterase AlAXEase

Zhang, Y., Li, P.Y., Zhang, Y.Z.

(2021) J Biological Chem 297: 100841-100841

Released	2021-06-02
Method	X-RAY DIFFRACTION 2.505 Å
Organisms	Arcticibacterium luteifluviistationis
Macromolecule	G-D-S-L family lipolytic protein (protein)