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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mackay, C.L."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Rhodospirillum rubrum (5)
	Haliangium ochraceum DSM 14365 (3)
	Homo sapiens (2)
	Rhodospirillum rubrum ATCC 11170 (2)
	synthetic construct (2)
	Escherichia coli (1)
	Haliangium ochraceum (1)
	Pyrococcus furiosus COM1 (1)

Taxonomy

	Bacteria (12)
	Eukaryota (2)
	other sequences (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (15)
	DNA (2)

Refinement Resolution (Å)

	2.0 - 2.5 (9)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (6)

Enzyme Classification Name

	Oxidoreductases (11)
	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Dihedral (9)
	Cyclic (4)
	Asymmetric (3)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (8)
	Artifacts (7)

AllSelected

1 to 15 of 15 Structures

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5DA5 \| pdb_00005da5	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973

He, D., Vanden Hehier, S., Georgiev, A., Altenbach, K., Tarrant, E., Mackay, C.L., Waldron, K.J., Clarke, D.J., Marles-Wright, J.

(2016) Elife 5:

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.064 Å
Organisms	Rhodospirillum rubrum
Macromolecule	Rru_A0973 (protein)
Unique Ligands	CA, FE, GOA

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5L89 \| pdb_00005l89	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A

He, D., Hughes, S., Vanden-Hehir, S., Georgiev, A., Altenbach, K., Tarrant, E., Mackay, C.L., Waldron, K.J., Clarke, D.J., Marles-Wright, J.

(2016) Elife 5:

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Rhodospirillum rubrum
Macromolecule	Rru_A0973 (protein)
Unique Ligands	CA

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5L8B \| pdb_00005l8b	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E62A

He, D., Hughes, S., Vanden-Hehir, S., Georgiev, A., Altenbach, K., Tarrant, E., Mackay, C.L., Waldron, K.J., Clarke, D.J., Marles-Wright, J.

(2016) Elife 5:

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Rhodospirillum rubrum
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA

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5L8F \| pdb_00005l8f	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A, E62A, H65A.

He, D., Hughes, S., Vanden-Hehir, S., Georgiev, A., Altenbach, K., Tarrant, E., Mackay, C.L., Waldron, K.J., Clarke, D.J., Marles-Wright, J.

To be published

Released	2017-06-21
Method	X-RAY DIFFRACTION 2.247 Å
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Rru_A0973 (protein)
Unique Ligands	MG, PGE

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5L8G \| pdb_00005l8g	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant H65A

He, D., Hughes, S., Vanden-Hehir, S., Georgiev, A., Altenbach, K., Tarrant, E., Mackay, C.L., Waldron, K.J., Clarke, D.J., Marles-Wright, J.

(2016) Elife 5:

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.974 Å
Organisms	Rhodospirillum rubrum
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA

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5N5E \| pdb_00005n5e	Download File View File

Crystal structure of encapsulated ferritin domain from Pyrococcus furiosus PFC_05175

Marles-Wright, J., He, D.

(2019) Biochem J 476: 975-989

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.026 Å
Organisms	Pyrococcus furiosus COM1
Macromolecule	PFC_05175 (protein)
Unique Ligands	FE

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5N5F \| pdb_00005n5f	Download File View File

Crystal structure of Haliangium ochraceum encapsulated ferritin

Marles-Wright, J., He, D.

(2019) Biochem J 476: 975-989

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.057 Å
Organisms	Haliangium ochraceum
Macromolecule	encapsulated ferritin (protein)
Unique Ligands	NA

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5NW9 \| pdb_00005nw9	Download File View File

Crystal structure of the complex of Tdp1 with duplex DNA

Richardson, J.M., Ruksenaite, E., Morris, E.R.

(2018) Nat Commun 9: 24-24

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein) DNA (5'-D(PTPGPCPGPCPAPGPTP*A)-3') (nucleic acid)

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5NWA \| pdb_00005nwa	Download File View File

Crystal structure of the complex of Tdp1 with duplex DNA

Richardson, J.M., Ruksenaite, E., Morris, E.R.

(2018) Nat Commun 9: 24-24

Released	2018-01-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein) DNA (5'-D(PAPAPTPGPCPGPCPAPTPTP*A)-3') (nucleic acid)

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6SUW \| pdb_00006suw	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 E31A variant

Marles-Wright, J., He, D.

(2020) J Biological Chem 295: 15511-15526

Released	2020-09-23
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA, FE

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6SV1 \| pdb_00006sv1	Download File View File

Crystal structure of Rhodospirillum rubrum Rru_A0973 E34A variant

Marles-Wright, J., He, D.

(2020) J Biological Chem 295: 15511-15526

Released	2020-09-23
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Rhodospirillum rubrum
Macromolecule	Encapsulated Ferritin (protein)
Unique Ligands	CA, FE

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7ODW \| pdb_00007odw	Download File View File

Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-03-09
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Linocin_M18 bacteriocin protein (protein)

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7OE2 \| pdb_00007oe2	Download File View File

Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum Encapsulated ferritin localisation sequence (protein) Linocin_M18 bacteriocin protein (protein)

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7OEU \| pdb_00007oeu	Download File View File

Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum encapsulated ferritin (protein) Linocin_M18 bacteriocin protein (protein)

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8DLE \| pdb_00008dle	Download File View File

Crosslinked Crystal Structure of the 8-amino-7-oxonanoate synthase, BioF, and Benzene Sulfonyl Fluoride-crypto Acyl Carrier Protein, BSF-ACP

Chen, A., Davis, T.D., Louie, G.V., Bowman, M.E., Noel, J.P., Burkart, M.D.

(2024) J Am Chem Soc 146: 1388-1395

Released	2023-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	8-amino-7-oxononanoate synthase (protein) Acyl carrier protein (protein)
Unique Ligands	EDO, PLP, SO4, SWC

1 to 15 of 15 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5DA5 | pdb_00005da5

Crystal structure of Rhodospirillum rubrum Rru_A0973

5L89 | pdb_00005l89

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A

5L8B | pdb_00005l8b

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E62A

5L8F | pdb_00005l8f

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A, E62A, H65A.

5L8G | pdb_00005l8g

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant H65A

5N5E | pdb_00005n5e

Crystal structure of encapsulated ferritin domain from Pyrococcus furiosus PFC_05175

5N5F | pdb_00005n5f

Crystal structure of Haliangium ochraceum encapsulated ferritin

5NW9 | pdb_00005nw9

Crystal structure of the complex of Tdp1 with duplex DNA

5NWA | pdb_00005nwa

Crystal structure of the complex of Tdp1 with duplex DNA

6SUW | pdb_00006suw

Crystal structure of Rhodospirillum rubrum Rru_A0973 E31A variant

6SV1 | pdb_00006sv1

Crystal structure of Rhodospirillum rubrum Rru_A0973 E34A variant

7ODW | pdb_00007odw

Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction

7OE2 | pdb_00007oe2

Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

7OEU | pdb_00007oeu

Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

8DLE | pdb_00008dle

Crosslinked Crystal Structure of the 8-amino-7-oxonanoate synthase, BioF, and Benzene Sulfonyl Fluoride-crypto Acyl Carrier Protein, BSF-ACP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5DA5 | pdb_00005da5

5L89 | pdb_00005l89

5L8B | pdb_00005l8b

5L8F | pdb_00005l8f

5L8G | pdb_00005l8g

5N5E | pdb_00005n5e

5N5F | pdb_00005n5f

5NW9 | pdb_00005nw9

5NWA | pdb_00005nwa

6SUW | pdb_00006suw

6SV1 | pdb_00006sv1

7ODW | pdb_00007odw

7OE2 | pdb_00007oe2

7OEU | pdb_00007oeu

8DLE | pdb_00008dle