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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Meshcheryakov, V.A."

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This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (4)
	Salmonella enterica subsp. enterica serovar Typhimurium (4)
	Methanocaldococcus jannaschii DSM 2661 (2)
	Aquifex aeolicus (1)
	Methanococcus maripaludis S2 (1)
	Rattus norvegicus (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Bacteria (5)
	Eukaryota (5)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (13)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (3)
	2020 - 2024 (4)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (7)
	Helical (1)

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1 to 13 of 13 Structures

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3AZD \| pdb_00003azd	Download File View File

Crystal structure of tropomyosin N-terminal fragment at 0.98A resolution

Meshcheryakov, V.A., Krieger, I., Kostyukova, A.S., Samatey, F.A.

(2011) Acta Crystallogr D Biol Crystallogr 67: 822-825

Released	2011-10-19
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Rattus norvegicus Saccharomyces cerevisiae S288C
Macromolecule	short alpha-tropomyosin,transcription factor GCN4 (protein)

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3B0Z \| pdb_00003b0z	Download File View File

Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium

Meshcheryakov, V.A., Samatey, F.A.

(2013) Acta Crystallogr D Biol Crystallogr 69: 812-820

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar biosynthetic protein flhB (protein)
Unique Ligands	NA, ZN

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3B1S \| pdb_00003b1s	Download File View File

Crystal structure of the cytoplasmic domain of FlhB from Aquifex aeolicus

Meshcheryakov, V.A., Samatey, F.A.

(2013) Acta Crystallogr D Biol Crystallogr 69: 812-820

Released	2012-07-11
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Aquifex aeolicus
Macromolecule	Flagellar biosynthetic protein flhB (protein)

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3TEE \| pdb_00003tee	Download File View File

Crystal Structure of Salmonella FlgA in open form

Matsunami, H., Samatey, F.A., Namba, K.

(2016) Sci Rep 6: 27399-27399

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagella basal body P-ring formation protein flgA (protein)
Unique Ligands	CL, GOL

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3VJP \| pdb_00003vjp	Download File View File

Orthorhombic Crystal Structure of Salmonella FlgA in closed form

Matsunami, H., Samatey, F.A., Namba, K.

(2016) Sci Rep 6: 27399-27399

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagella basal body P-ring formation protein flgA (protein)

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3VKI \| pdb_00003vki	Download File View File

Monoclinic Crystal Structure of Salmonella FlgA in closed form

Matsunami, H., Samatey, F.A., Namba, K.

(2016) Sci Rep 6: 27399-27399

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagella basal body P-ring formation protein flgA (protein)

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4WIA \| pdb_00004wia	Download File View File

Crystal structure of flagellar accessory protein FlaH from Methanocaldococcus jannaschii

Meshcheryakov, V.A., Wolf, M.

(2016) Protein Sci 25: 1147-1155

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Putative flagella-related protein H (protein)
Unique Ligands	GOL, SO4

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5YA6 \| pdb_00005ya6	Download File View File

Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii

Meshcheryakov, V.A., Wolf, M.

(2019) EMBO Rep 20:

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Flagellin B1 (protein)
Unique Ligands	CA

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5Z1L \| pdb_00005z1l	Download File View File

Cryo-EM structure of Methanoccus maripaludis archaellum

Meshcheryakov, V.A., Shibata, S., Schreiber, M.T., Villar-Briones, A., Jarrell, K.F., Aizawa, S., Wolf, M.

(2019) EMBO Rep 20:

Released	2019-02-13
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Methanococcus maripaludis S2
Macromolecule	Flagellin (protein)

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7CLI \| pdb_00007cli	Download File View File

Structure of NF-kB p52 homodimer bound to P-Selectin kB DNA fragment

Meshcheryakov, V.A., Wang, V.Y.-F.

(2023) Elife 12:

Released	2021-07-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor NF-kappa-B p52 subunit (protein) DNA (5'-D(CPAPAPGPGPGPGPTPCPAPCPCPCPCPCPTPTPC)-3') (nucleic acid) DNA (5'-D(GPAPAPGPGPGPGPGPTPGPAPCPCPCPCPTPTPG)-3') (nucleic acid)

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7VUP \| pdb_00007vup	Download File View File

Structure of NF-kB p52 homodimer bound to +1/-1 swap P-Selectin kB DNA fragment

Meshcheryakov, V.A., Wang, V.Y.-F.

(2023) Elife 12:

Released	2021-11-24
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor NF-kappa-B p52 subunit (protein) DNA (5'-D(APAPGPGPGPGPGPAPGPTPCPCPCPCPTPTPG)-3') (nucleic acid) DNA (5'-D(CPAPAPGPGPGPGPAPCPTPCPCPCPCPCPTPT)-3') (nucleic acid)

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7VUQ \| pdb_00007vuq	Download File View File

Structure of NF-kB p52 homodimer bound to A/T-centric P-Selectin kB DNA fragment

Meshcheryakov, V.A., Wang, V.Y.-F.

(2023) Elife 12:

Released	2021-11-24
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor NF-kappa-B p52 subunit (protein) DNA (5'-D(CPAPAPGPGPGPGPTPTPAPCPCPCPCPCPTPT)-3') (nucleic acid) DNA (5'-D(GPAPAPGPGPGPGPGPTPAPAPCPCPCPCPTPTP*G)-3') (nucleic acid)

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7W7L \| pdb_00007w7l	Download File View File

Structure of NF-kB p52 homodimer bound to 13-mer A/T-centric P-Selectin kB DNA fragment

Meshcheryakov, V.A., Wang, V.Y.-F.

(2023) Elife 12:

Released	2022-01-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor NF-kappa-B p52 subunit (protein) DNA (5'-D(APGPGPGPGPTPTPAPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPTPAPAPCPCPCPCPT)-3') (nucleic acid)

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3AZD | pdb_00003azd

Crystal structure of tropomyosin N-terminal fragment at 0.98A resolution

3B0Z | pdb_00003b0z

Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium

3B1S | pdb_00003b1s

Crystal structure of the cytoplasmic domain of FlhB from Aquifex aeolicus

3TEE | pdb_00003tee

Crystal Structure of Salmonella FlgA in open form

3VJP | pdb_00003vjp

Orthorhombic Crystal Structure of Salmonella FlgA in closed form

3VKI | pdb_00003vki

Monoclinic Crystal Structure of Salmonella FlgA in closed form

4WIA | pdb_00004wia

Crystal structure of flagellar accessory protein FlaH from Methanocaldococcus jannaschii

5YA6 | pdb_00005ya6

Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii

5Z1L | pdb_00005z1l

Cryo-EM structure of Methanoccus maripaludis archaellum

7CLI | pdb_00007cli

Structure of NF-kB p52 homodimer bound to P-Selectin kB DNA fragment

7VUP | pdb_00007vup

Structure of NF-kB p52 homodimer bound to +1/-1 swap P-Selectin kB DNA fragment

7VUQ | pdb_00007vuq

Structure of NF-kB p52 homodimer bound to A/T-centric P-Selectin kB DNA fragment

7W7L | pdb_00007w7l

Structure of NF-kB p52 homodimer bound to 13-mer A/T-centric P-Selectin kB DNA fragment

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

3AZD | pdb_00003azd

3B0Z | pdb_00003b0z

3B1S | pdb_00003b1s

3TEE | pdb_00003tee

3VJP | pdb_00003vjp

3VKI | pdb_00003vki

4WIA | pdb_00004wia

5YA6 | pdb_00005ya6

5Z1L | pdb_00005z1l

7CLI | pdb_00007cli

7VUP | pdb_00007vup

7VUQ | pdb_00007vuq

7W7L | pdb_00007w7l