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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Palaninathan, S.K."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (16)
	Mycobacterium tuberculosis (15)
	Mycobacterium tuberculosis H37Rv (2)
	Mycobacterium tuberculosis variant bovis AF2122/97 (1)

Taxonomy

	Bacteria (18)
	Eukaryota (16)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (22)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (25)
	2010 - 2014 (9)

Enzyme Classification Name

	Lyases (7)
	Transferases (5)
	Hydrolases (2)

Symmetry Type

	Cyclic (15)
	Dihedral (16)
	Tetrahedral (7)
	Asymmetric (2)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	All beta proteins (20)
	Artifacts (10)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 34 Structures

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1Y8T \| pdb_00001y8t	Download File View File

Crystal Structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form

Palaninathan, S.K., MohamedMohaideen, N.N., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

To be published

Released	2005-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	hypothetical protein Rv0983 (protein)

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2B77 \| pdb_00002b77	Download File View File

Human transthyretin (TTR) complexed with Diflunisal analogues- TTR.2',4'-DICHLORO-4-HYDROXY-1,1'-BIPHENYL-3-CARBOXYLIC ACID

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2004) J Med Chem 47: 355-374

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	3CA

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2B9A \| pdb_00002b9a	Download File View File

Human transthyretin (TTR) complexed with diflunisal analogues- TTR.3',5'-difluorobiphenyl-4-carboxylic acid

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2004) J Med Chem 47: 355-374

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	FBC

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2F7I \| pdb_00002f7i	Download File View File

Human transthyretin (TTR) complexed with diflunisal analogues- TTR. 2',6'-Difluorobiphenyl-4-carboxylic Acid

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2004) J Med Chem 47: 355-374

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	26C

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2F8I \| pdb_00002f8i	Download File View File

Human transthyretin (TTR) complexed with Benzoxazole

Palaninathan, S.K., Mohamedmohaideen, N.N., Sacchettini, J.C., Kelly, J.W.

(2003) Angew Chem Int Ed Engl 42: 2758-2761

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.541 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	205

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2FBR \| pdb_00002fbr	Download File View File

Human transthyretin (TTR) complexed with bivalant amyloid inhibitor (4 carbon linker)

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2003) J Am Chem Soc 125: 13404-13414

Released	2005-12-27
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	44C

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2FLM \| pdb_00002flm	Download File View File

Human transthyretin (TTR) complexed with bivalant amyloid inhibitor (6 carbon linker)

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2003) J Am Chem Soc 125: 13404-13414

Released	2006-02-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	6CA

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2G5U \| pdb_00002g5u	Download File View File

Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4,4'-dihydroxy-3,3',5,5'-tetrachlorobiphenyl

Palaninathan, S.K., Smith, C., Safe, S.H., Kelly, J.W., Sacchettini, J.C.

(2004) Chem Biol 11: 1719-1728

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	PCQ

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2G9K \| pdb_00002g9k	Download File View File

Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4-hydroxy-2',3,3',4',5-Pentachlorobiphenyl

Palaninathan, S.K., Smith, C., Safe, S.H., Kelly, J.W., Sacchettini, J.C.

(2004) Chem Biol 11: 1719-1728

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	NE1

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2GAB \| pdb_00002gab	Download File View File

Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4-hydroxy-3,3',5,4'-tetrachlorobiphenyl

Palaninathan, S.K., Smith, C., Safe, S.H., Kelly, J.W., Sacchettini, J.C.

(2004) Chem Biol 11: 1719-1728

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	NE2

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2PKF \| pdb_00002pkf	Download File View File

Crystal structure of M tuberculosis Adenosine Kinase (apo)

Reddy, M.C.M., Palaninathan, S.K., Shetty, N.D., Owen, J.L., Watson, M.D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2007) J Biological Chem 282: 27334-27342

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Adenosine kinase (protein)

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2PKK \| pdb_00002pkk	Download File View File

Crystal structure of M tuberculosis Adenosine Kinase complexed with 2-fluro adenosine

Reddy, M.C.M., Palaninathan, S.K., Shetty, N.D., Owen, J.L., Watson, M.D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2007) J Biological Chem 282: 27334-27342

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Adenosine kinase (protein)
Unique Ligands	2FA

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2PKM \| pdb_00002pkm	Download File View File

Crystal structure of M tuberculosis Adenosine Kinase complexed with adenosine

Reddy, M.C.M., Palaninathan, S.K., Shetty, N.D., Owen, J.L., Watson, M.D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2007) J Biological Chem 282: 27334-27342

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Adenosine kinase (protein)
Unique Ligands	ADN

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2PKN \| pdb_00002pkn	Download File View File

Crystal structure of M tuberculosis Adenosine Kinase complexed with AMP-PCP (non-hydrolyzable ATP analog)

Reddy, M.C.M., Palaninathan, S.K., Shetty, N.D., Owen, J.L., Watson, M.D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2007) J Biological Chem 282: 27334-27342

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Adenosine kinase (protein)
Unique Ligands	ACP

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2Z9I \| pdb_00002z9i	Download File View File

Crystal structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form

Palaninathan, S.K., Mohamedmohaideen, N.N., Sacchettini, J.C.

(2008) Biochemistry 47: 6092-6102

Released	2008-06-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	GATV (protein) PROBABLE SERINE PROTEASE PEPD (protein) SVEQV (protein)

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3BZQ \| pdb_00003bzq	Download File View File

High resolution crystal structure of Nitrogen Regulatory Protein (Rv2919c) of Mycobacterium tuberculosis

Reddy, M.C., Palaninathan, S.K., Shetty, N.D., Owen, J.L., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2010) Protein Sci 19: 1513-1524

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Nitrogen regulatory protein P-II (protein)

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3CBR \| pdb_00003cbr	Download File View File

Crystal structure of human Transthyretin (TTR) at pH3.5

Mohamedmohaideen, N.N., Palaninathan, S.K., Snee, W.C., Kelly, J.W., C Sacchettini, J.

(2008) J Mol Biology 382: 1157-1167

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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3D2T \| pdb_00003d2t	Download File View File

Human transthyretin (ttr) complexed with diflunisal

Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.

(2004) J Med Chem 47: 355-374

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	1FL

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3D7P \| pdb_00003d7p	Download File View File

Crystal structure of human Transthyretin (TTR) at pH 4.0

Palaninathan, S.K., Mohamedmohaideen, N.N., Snee, W.C., Kelly, J.W., Sacchettini, J.C.

(2008) J Mol Biology 382: 1157-1167

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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3GLZ \| pdb_00003glz	Download File View File

Human Transthyretin (TTR) complexed with(E)-3-(2-(trifluoromethyl)benzylideneaminooxy)propanoic acid (inhibitor 11)

Mohamedmohaideen, N.N., Palaninathan, S.K., Orlandini, E., Sacchettini, J.C.

(2009) PLoS One 4: e6290-e6290

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	1BD

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3GS0 \| pdb_00003gs0	Download File View File

Human transthyretin (TTR) complexed with (S)-3-(9H-fluoren-9-ylideneaminooxy)-2-methylpropanoic acid (inhibitor 16)

Mohamedmohaideen, N.N., Palaninathan, S.K., Orlandini, E., Sacchettini, J.C.

(2009) PLoS One 4: e6290-e6290

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	6BD

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3GS4 \| pdb_00003gs4	Download File View File

Human transthyretin (TTR) complexed with 3-(9H-fluoren-9-ylideneaminooxy)propanoic acid (inhibitor 15)

Mohamedmohaideen, N.N., Palaninathan, S.K., Orlandini, E., Sacchettini, J.C.

(2009) PLoS One 4: e6290-e6290

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	7BD

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3GS7 \| pdb_00003gs7	Download File View File

Human transthyretin (TTR) complexed with (E)-3-(2-methoxybenzylideneaminooxy)propanoic acid (inhibitor 13)

Mohamedmohaideen, N.N., Palaninathan, S.K., Orlandini, E., Sacchettini, J.C.

(2009) PLoS One 4: e6290-e6290

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	8BD

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3I54 \| pdb_00003i54	Download File View File

Crystal structure of MtbCRP in complex with cAMP

Reddy, M.C., Palaninathan, S.K., Bruning, J.B., Thurman, C., Smith, D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2009) J Biological Chem 284: 36581-36591

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcriptional regulator, Crp/Fnr family (protein)
Unique Ligands	CMP

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3I59 \| pdb_00003i59	Download File View File

Crystal structure of MtbCRP in complex with N6-cAMP

Reddy, M.C., Palaninathan, S.K., Bruning, J.B., Thurman, C., Smith, D., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2009) J Biological Chem 284: 36581-36591

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcriptional regulator, Crp/Fnr family (protein)
Unique Ligands	CL, N6R, N6S

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1Y8T | pdb_00001y8t

2B77 | pdb_00002b77

2B9A | pdb_00002b9a

2F7I | pdb_00002f7i

2F8I | pdb_00002f8i

2FBR | pdb_00002fbr

2FLM | pdb_00002flm

2G5U | pdb_00002g5u

2G9K | pdb_00002g9k

2GAB | pdb_00002gab

2PKF | pdb_00002pkf

2PKK | pdb_00002pkk

2PKM | pdb_00002pkm

2PKN | pdb_00002pkn

2Z9I | pdb_00002z9i

3BZQ | pdb_00003bzq

3CBR | pdb_00003cbr

3D2T | pdb_00003d2t

3D7P | pdb_00003d7p

3GLZ | pdb_00003glz

3GS0 | pdb_00003gs0

3GS4 | pdb_00003gs4

3GS7 | pdb_00003gs7

3I54 | pdb_00003i54

3I59 | pdb_00003i59