RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Park, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 375 Structures.

Refinements

Structure Determination Methodology

experimental (375)

Scientific Name of Source Organism

	Homo sapiens (164)
	Mus musculus (27)
	Influenza A virus (A/California/04/2009(H1N1)) (24)
	synthetic construct (20)
	Gallus gallus (19)
	Escherichia coli K-12 (9)
	Human immunodeficiency virus 1 (9)
	Escherichia coli (7)
	Lobophyllia hemprichii (7)
	Pseudomonas aeruginosa (7)

More...

Taxonomy

	Eukaryota (221)
	Bacteria (101)
	Riboviria (41)
	other sequences (20)
	Duplodnaviria (9)
	Eukaryota (eukaryotes) (5)
	Archaea (4)

Experimental Method

	X-RAY DIFFRACTION (313)
	ELECTRON MICROSCOPY (60)
	SOLUTION NMR (2)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (375)
	DNA (14)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (23)
	1.5 - 2.0 (86)
	2.0 - 2.5 (123)
	2.5 - 3.0 (65)
	3.0 - 3.5 (39)
	3.5 - 4.0 (23)
	4.0 - 4.5 (8)
	> 4.5 (6)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (62)
	2015 - 2019 (127)
	2020 - 2024 (168)
	2025 - 2029 (12)

Enzyme Classification Name

	Transferases (93)
	Hydrolases (94)
	Oxidoreductases (26)
	Lyases (28)
	Ligases (10)
	Isomerases (9)

Membrane Protein Annotation

	mpstruc (16)
	PDBTM (18)
	MemProtMD (14)
	OPM (8)

Symmetry Type

	Asymmetric (217)
	Cyclic (136)
	Dihedral (32)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (58)
	Alpha and beta proteins (a+b) (34)
	Artifacts (44)
	All alpha proteins (42)
	All beta proteins (12)
	Multi-domain proteins (alpha and beta) (8)

AllSelected

1 to 25 of 375 Structures

Page 1 of 15

Sort by

Explore in 3D

1NG3 \| pdb_00001ng3	Download File View File

Complex of ThiO (glycine oxidase) with acetyl-glycine

Settembre, E.C., Dorrestein, P.C., Park, J., Augustine, A., Begley, T.P., Ealick, S.E.

(2003) Biochemistry 42: 2971-2981

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis
Macromolecule	Glycine oxidase (protein)
Unique Ligands	AAC, FAD, PO4

Explore in 3D

1NG4 \| pdb_00001ng4	Download File View File

Structure of ThiO (glycine oxidase) from Bacillus subtilis

Settembre, E.C., Dorrestein, P.C., Park, J., Augustine, A., Begley, T.P., Ealick, S.E.

(2003) Biochemistry 42: 2971-2981

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	Glycine oxidase (protein)
Unique Ligands	FAD, PEO, PO4

Explore in 3D

2E2E \| pdb_00002e2e	Download File View File

TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7

Han, D., Kim, K., Oh, J., Park, J., Kim, Y.

(2008) Proteins 70: 900-914

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Formate-dependent nitrite reductase complex nrfG subunit (protein)
Unique Ligands	BME, IMD

Explore in 3D

2Q37 \| pdb_00002q37	Download File View File

Crystal structure of OHCU decarboxylase in the presence of (S)-allantoin

Kim, K.

(2007) J Biological Chem 282: 23457-23464

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	OHCU decarboxylase (protein)
Unique Ligands	3AL

Explore in 3D

2VR5 \| pdb_00002vr5	Download File View File

Crystal structure of Trex from Sulfolobus Solfataricus in complex with acarbose intermediate and glucose

Song, H.-N., Yoon, S.-M., Lee, S.-J., Cha, H.-J., Park, K.-H., Woo, E.-J.

(2008) J Biological Chem 283: 28641

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	GLYCOGEN OPERON PROTEIN GLGX (protein)
Unique Ligands	A16, GLC, GOL, SO4

Explore in 3D

2VUY \| pdb_00002vuy	Download File View File

Crystal structure of Glycogen Debranching exzyme TreX from Sulfolobus solfatarius

Song, H.-N., Yoon, S.-M., Cha, H.-J., Park, K.-H., Woo, E.-J.

(2008) J Biological Chem 283: 28641

Released	2008-07-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	GLYCOGEN OPERON PROTEIN GLGX (protein)

Explore in 3D

3SGM \| pdb_00003sgm	Download File View File

Bromoderivative-2 of amyloid-related segment of alphaB-crystallin residues 90-100

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.7006 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)
Unique Ligands	MPD

Explore in 3D

3SGN \| pdb_00003sgn	Download File View File

Bromoderivative-8 of amyloid-related segment of alphaB-crystallin residues 90-100

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.807 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)

Explore in 3D

3SGO \| pdb_00003sgo	Download File View File

Amyloid-related segment of alphaB-crystallin residues 90-100

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.557 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)

Explore in 3D

3SGP \| pdb_00003sgp	Download File View File

Amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.4016 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)
Unique Ligands	MPD, MRD

Explore in 3D

3SGR \| pdb_00003sgr	Download File View File

Tandem repeat of amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	Tandem repeat of amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L (protein)
Unique Ligands	MPD

Explore in 3D

3SGS \| pdb_00003sgs	Download File View File

Amyloid-related segment of alphaB-crystallin residues 95-100

Laganowsky, A., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2012) Science 335: 1228-1231

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)

Explore in 3D

3WUL \| pdb_00003wul	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

Explore in 3D

3WUM \| pdb_00003wum	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

Explore in 3D

3WXQ \| pdb_00003wxq	Download File View File

Serial femtosecond X-ray structure of human fatty acid-binding protein type-3 (FABP3) in complex with stearic acid (C18:0) determined using X-ray free-electron laser at SACLA

Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	STE

Explore in 3D

3WXS \| pdb_00003wxs	Download File View File

Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA)

Masuda, T., Nango, E., Sugahara, M., Mizohata, E., Tanaka, T., Tanaka, R., Suzuki, M., Mikami, B., Iwata, S.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	thaumatin I (protein)
Unique Ligands	TLA

Explore in 3D

3WXT \| pdb_00003wxt	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

Explore in 3D

3WXU \| pdb_00003wxu	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

Explore in 3D

3ZHD \| pdb_00003zhd	Download File View File

The crystal structure of single domain antibody 8-4 scaffold.

Song, H.-N., Woo, E.-J., Lim, H.-K.

(2014) PLoS One 9: 98178

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Homo sapiens
Macromolecule	MG8-4 SCAFFOLD ANTIBODY (protein)
Unique Ligands	SO4

Explore in 3D

3ZHK \| pdb_00003zhk	Download File View File

The crystal structure of single domain antibody 2x1 scaffold

Song, H.-N., Woo, E.-J., Lim, H.-K.

(2014) PLoS One 9: 98178

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Homo sapiens
Macromolecule	MG2X1 SCAFFOLD ANTIBODY (protein)
Unique Ligands	SO4

Explore in 3D

3ZHL \| pdb_00003zhl	Download File View File

The crystal structure of single domain antibody 8-14 scaffold

Song, H.-N., Woo, E.-J., Lim, H.-K.

(2014) PLoS One 9: 98178

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens
Macromolecule	MG8-14 SCAFFOLD ANTIBODY (protein)
Unique Ligands	GOL

Explore in 3D

4ATW \| pdb_00004atw	Download File View File

The crystal structure of Arabinofuranosidase

Dumbrepatil, A., Song, H.-N., Jung, T.-Y., Kim, T.-J., Woo, E.-J.

(2012) J Microbiol Biotechnol 22: 1724

Released	2012-05-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	ALPHA-L-ARABINOFURANOSIDASE DOMAIN PROTEIN (protein)

Explore in 3D

4DEM \| pdb_00004dem	Download File View File

Crystal structure of human FPPS in complex with YS_04_70

Park, J., Lin, Y.-S., Tsantrizos, Y.S., Berghuis, A.M.

(2012) J Med Chem 55: 3201-3215

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	MG, YS4

Explore in 3D

4E0K \| pdb_00004e0k	Download File View File

Crystal Structure of the amyloid-fibril forming peptide KDWSFY derived from human Beta 2 Microglobulin (58-63)

Zhao, M., Liu, C., Sawaya, M.R., Eisenberg, D.

(2012) Proc Natl Acad Sci U S A 109: 20913-20918

Released	2012-12-19
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Homo sapiens
Macromolecule	Amyloidogenic peptide segment KDWSFY (protein)
Unique Ligands	NA, PE4

Explore in 3D

4E0L \| pdb_00004e0l	Download File View File

FYLLYYT segment from human Beta 2 Microglobulin (62-68) displayed on 54-membered macrocycle scaffold

Zhao, M., Liu, C., Michael, S.R., Eisenberg, D.

(2012) Proc Natl Acad Sci U S A 109: 20913-20918

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cyclic pseudo-peptide FYLLYYT(ORN)KN(HAO)SA(ORN) (protein)
Unique Ligands	MPD

1 to 25 of 375 Structures

Page 1 of 15

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NG3 | pdb_00001ng3

1NG4 | pdb_00001ng4

2E2E | pdb_00002e2e

2Q37 | pdb_00002q37

2VR5 | pdb_00002vr5

2VUY | pdb_00002vuy

3SGM | pdb_00003sgm

3SGN | pdb_00003sgn

3SGO | pdb_00003sgo

3SGP | pdb_00003sgp

3SGR | pdb_00003sgr

3SGS | pdb_00003sgs

3WUL | pdb_00003wul

3WUM | pdb_00003wum

3WXQ | pdb_00003wxq

3WXS | pdb_00003wxs

3WXT | pdb_00003wxt

3WXU | pdb_00003wxu

3ZHD | pdb_00003zhd

3ZHK | pdb_00003zhk

3ZHL | pdb_00003zhl

4ATW | pdb_00004atw

4DEM | pdb_00004dem

4E0K | pdb_00004e0k

4E0L | pdb_00004e0l