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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pazy, Y."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (10)
	Streptomyces avidinii (7)
	Escherichia coli K-12 (6)
	Gallus gallus (4)
	Homo sapiens (3)
	Mus musculus (3)
	Priestia megaterium (3)
	Borreliella burgdorferi (1)
	Pseudomonas nitroreducens (1)

Taxonomy

	Bacteria (28)
	Eukaryota (7)

Experimental Method

X-RAY DIFFRACTION (35)

Polymer Entity Type

Protein (35)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (14)
	2.5 - 3.0 (8)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (8)
	2010 - 2014 (2)
	2015 - 2019 (14)

Enzyme Classification Name

Hydrolases (10)

Symmetry Type

	Asymmetric (21)
	Dihedral (11)
	Cyclic (3)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a/b) (17)
	Artifacts (13)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 35 Structures

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1LCV \| pdb_00001lcv	Download File View File

streptavidin-norbiotin complex

Livnah, O., Pazy, Y.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces avidinii
Macromolecule	streptavidin (protein)
Unique Ligands	SNR

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1LCW \| pdb_00001lcw	Download File View File

streptavidin-homobiotin complex

Livnah, O., Pazy, Y., Bayer, E.A., Wilchek, M.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	SHM

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1LCZ \| pdb_00001lcz	Download File View File

streptavidin-BCAP complex

Livnah, O., Pazy, Y., Bayer, E.A., Wilchek, M.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BH7

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1LDO \| pdb_00001ldo	Download File View File

avidin-norbioitn complex

Pazy, Y., Kulik, T., Bayer, E.A., Wilchek, M., Livnah, O.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Gallus gallus
Macromolecule	avidin (protein)
Unique Ligands	NAG, SNR

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1LDQ \| pdb_00001ldq	Download File View File

avidin-homobiotin complex

Pazy, Y., Kulik, T., Bayer, E.A., Wilchek, M., Livnah, O.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)
Unique Ligands	NAG, SHM

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1LEL \| pdb_00001lel	Download File View File

The avidin BCAP complex

Pazy, Y., Kulik, T., Bayer, E.A., Wilchek, M., Livnah, O.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)
Unique Ligands	BH7, NAG

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1NQM \| pdb_00001nqm	Download File View File

Structure of Savm-W120K, streptavidin mutant

Pazy, Y., Eisenberg-Domovich, Y., Laitinen, O.H., Kulomaa, M.S., Bayer, E.A., Wilchek, M., Livnah, O.

(2003) J Bacteriol 185: 4050-4056

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1NQN \| pdb_00001nqn	Download File View File

Structure of Avm-W110K (W110K mutant of avidin)

Pazy, Y., Eisenberg-Domovich, Y., Laitinen, O.H., Kulomaa, M.S., Bayer, E.A., Wilchek, M., Livnah, O.

(2003) J Bacteriol 185: 4050-4056

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)

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1RXH \| pdb_00001rxh	Download File View File

Crystal structure of streptavidin mutant L124R (M1) complexed with biotinyl p-nitroanilide (BNI)

Eisenberg-Domovich, Y., Pazy, Y., Nir, O., Raboy, B., Bayer, E.A., Wilchek, M., Livnah, O.

(2004) Proc Natl Acad Sci U S A 101: 5916-5921

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BNI

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1RXJ \| pdb_00001rxj	Download File View File

Crystal structure of streptavidin mutant (M2) where the L3,4 loop was replace by that of avidin

Eisenberg-Domovich, Y., Pazy, Y., Nir, O., Raboy, B., Bayer, E.A., Wilchek, M., Livnah, O.

(2004) Proc Natl Acad Sci U S A 101: 5916-5921

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BNI

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1RXK \| pdb_00001rxk	Download File View File

crystal structure of streptavidin mutant (M3) a combination of M1+M2

Eisenberg-Domovich, Y., Pazy, Y., Nir, O., Raboy, B., Bayer, E.A., Wilchek, M., Livnah, O.

(2004) Proc Natl Acad Sci U S A 101: 5916-5921

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BNI

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2J8U \| pdb_00002j8u	Download File View File

Large CDR3a loop alteration as a function of MHC mutation.

Miller, P.J., Benhar, Y.P., Biddison, W., Collins, E.J.

(2007) J Mol Biology 373: 315-327

Released	2007-10-16
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	AHIII TCR ALPHA CHAIN (protein) AHIII TCR BETA CHAIN (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) SELF-PEPTIDE P1049 (protein)

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2JCC \| pdb_00002jcc	Download File View File

AH3 recognition of mutant HLA-A2 W167A

Miller, P., Benhar, Y.P., Biddison, W., Collins, E.J.

(2007) J Mol Biology 373: 315

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) P1049 (protein) TCR ALPHA (protein) TCR BETA (protein)

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2UWE \| pdb_00002uwe	Download File View File

Large CDR3a loop alteration as a function of MHC mutation

Miller, P.J., Pazy, Y., Conti, B., Riddle, D., Biddison, W.E., Appella, E., Collins, E.J.

(2007) J Mol Biology 373: 315

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	AHIII TCR ALPHA CHAIN (protein) AHIII TCR BETA CHAIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) UNCHARACTERIZED PROTEIN C15ORF24 (protein)

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3F7N \| pdb_00003f7n	Download File View File

Crystal Structure of CheY triple mutant F14E, N59M, E89L complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FFT \| pdb_00003fft	Download File View File

Crystal Structure of CheY double mutant F14E, E89R complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FFW \| pdb_00003ffw	Download File View File

Crystal Structure of CheY triple mutant F14Q, N59K, E89Y complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FFX \| pdb_00003ffx	Download File View File

Crystal Structure of CheY triple mutant F14E, N59R, E89H complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FGZ \| pdb_00003fgz	Download File View File

Crystal Structure of CheY triple mutant F14E, N59M, E89R complexed with BeF3- and Mn2+

Wollish, A.C., Miller, P.J., Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, NH4

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3HZH \| pdb_00003hzh	Download File View File

Crystal structure of the CheX-CheY-BeF3-Mg+2 complex from Borrelia burgdorferi

Pazy, Y., Silversmith, R.E., Guarinari, M., Zhao, R.

(2010) Proc Natl Acad Sci U S A 107: 1924-1929

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Borreliella burgdorferi
Macromolecule	Chemotaxis operon protein (CheX) (protein) Chemotaxis response regulator (CheY-3) (protein)
Unique Ligands	MG

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3OO0 \| pdb_00003oo0	Download File View File

Structure of apo CheY A113P

Pazy, Y., Collins, E.J., Guanga, G.P., Miller, P.J., Immormino, R.M., Silversmith, R.E., Bourret, R.B.

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein CheY (protein)
Unique Ligands	GOL, MN, NH4, SO4

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5OAE \| pdb_00005oae	Download File View File

Crystal Structure of tyrosinase from Bacillus megaterium with SVF inhibitor in the active site

Deri, B., Gitto, R., Pazy Benhar, Y., Fishman, A.

(2018) J Med Chem 61: 3908-3917

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Priestia megaterium
Macromolecule	Tyrosinase (protein)
Unique Ligands	CU, SVF

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6EI4 \| pdb_00006ei4	Download File View File

Crystal Structure of tyrosinase from Bacillus megaterium with B5N inhibitor in the active site

Deri, B., Gitto, R., Pazy Benhar, Y., Fishman, A.

(2018) J Med Chem 61: 3908-3917

Released	2018-04-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Priestia megaterium
Macromolecule	Tyrosinase (protein)
Unique Ligands	B5N, CU

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6EM0 \| pdb_00006em0	Download File View File

Crystal Structure of 2-hydroxybiphenyl 3-monooxygenase M321A from Pseudomonas azelaica

Deri, B., Bregman-Cohen, A., Pazy Benhar, Y., Fishman, A.

(2018) Chembiochem 19: 583-590

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Pseudomonas nitroreducens
Macromolecule	2-hydroxybiphenyl-3-monooxygenase (protein)
Unique Ligands	FAD