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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pellegrini, M."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (28)
	Severe acute respiratory syndrome coronavirus 2 (15)
	Vibrio vulnificus (2)
	Vicugna pacos (2)
	Arabidopsis thaliana (1)
	Mus musculus (1)
	Numida meleagris (1)
	Prochlorococcus marinus str. MIT 9303 (1)
	Saccharomyces cerevisiae S288C (1)
	Vibrio cholerae O395 (1)

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Taxonomy

	Eukaryota (34)
	Riboviria (15)
	Bacteria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (26)
	SOLUTION NMR (12)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (7)
	2020 - 2024 (19)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (4)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (2)
	PDBTM (1)

Symmetry Type

	Asymmetric (35)
	Cyclic (6)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All beta proteins (4)
	Artifacts (3)
	Small proteins (2)
	Designed proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 40 Structures

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1AZV \| pdb_00001azv	Download File View File

FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN)

Hart, P.J., Liu, H., Pellegrini, M., Nersissian, A.M., Gralla, E.B., Valentine, J.S., Eisenberg, D.

(1998) Protein Sci 7: 545-555

Released	1998-02-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	COPPER/ZINC SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1BL1 \| pdb_00001bl1	Download File View File

PTH RECEPTOR N-TERMINUS FRAGMENT, NMR, 1 STRUCTURE

Pellegrini, M., Bisello, A., Rosenblatt, M., Chorev, M., Mierke, D.F.

(1998) Biochemistry 37: 12737-12743

Released	1999-03-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PARATHYROID HORMONE RECEPTOR (protein)

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1D6G \| pdb_00001d6g	Download File View File

MOLECULAR COMPLEX OF CHOLECYSTOKININ-8 AND N-TERMINUS OF THE CHOLECYSTOKININ A RECEPTOR BY NMR SPECTROSCOPY

Pellegrini, M., Mierke, D.F.

(1999) Biochemistry 38: 14775-14783

Released	1999-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	cholecystokinin type a receptor (protein) cholecystokinin-8 (protein)

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1FBI \| pdb_00001fbi	Download File View File

CRYSTAL STRUCTURE OF A CROSS-REACTION COMPLEX BETWEEN FAB F9.13.7 AND GUINEA-FOWL LYSOZYME

Lescar, J., Alzari, P.M.

(1995) J Biological Chem 270: 18067-18076

Released	1995-02-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Numida meleagris
Macromolecule	GUINEA FOWL LYSOZYME (protein) IGG1 F9.13.7 FAB (HEAVY CHAIN) (protein) IGG1 F9.13.7 FAB (LIGHT CHAIN) (protein)

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1FOZ \| pdb_00001foz	Download File View File

STRUCTURE OF CYCLIC PEPTIDE INHIBITORS OF MAMMALIAN RIBONUCLEOTIDE REDUCTASE

Pellegrini, M., Liehr, S., Fisher, A.L., Cooperman, B.S., Mierke, D.F.

(2000) Biochemistry 39: 12210-12215

Released	2000-11-22
Method	SOLUTION NMR
Macromolecule	SYNTHETIC CYCLIC PEPTIDE (protein)

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1KEF \| pdb_00001kef	Download File View File

PDZ1 of SAP90

Piserchio, A., Pellegrini, M., Mehta, S., Blackman, S.M., Garcia, E.P., Marshall, J., Mierke, D.F.

(2002) J Biological Chem 277: 6967-6973

Released	2002-03-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	synapse associated protein-90 (protein)

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2KMZ \| pdb_00002kmz	Download File View File

NMR Structure of hFn14

Pellegrini, M., Willen, L., Perroud, M., Krushinskie, D., Strauch, K., Cuervo, H., Sun, Y., Day, E.S., Schneider, P., Zheng, T.S.

(2013) FEBS J 280: 1818-1829

Released	2011-06-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor receptor superfamily member 12A (protein)

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2KN0 \| pdb_00002kn0	Download File View File

Solution NMR Structure of xenopus Fn14

Pellegrini, M., Willen, L., Perroud, M., Krushinskie, D., Strauch, K., Cuervo, H., Sun, Y., Day, E.S., Schneider, P., Zheng, T.S.

(2013) FEBS J 280: 1818-1829

Released	2011-06-29
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	Fn14 (protein)

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2KN1 \| pdb_00002kn1	Download File View File

Solution NMR Structure of BCMA

Pellegrini, M., Willen, L., Perroud, M., Krushinskie, D., Strauch, K., Cuervo, H., Sun, Y., Day, E.S., Schneider, P., Zheng, T.S.

(2013) FEBS J 280: 1818-1829

Released	2011-02-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor receptor superfamily member 17 (protein)

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2N5R \| pdb_00002n5r	Download File View File

NMR structure of cFLIP-derived calmodulin binding peptide

Panaitiu, A.E.

(2015) PLoS One 10: e0141692-e0141692

Released	2015-11-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CASP8 and FADD-like apoptosis regulator (protein)

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3BRT \| pdb_00003brt	Download File View File

NEMO/IKK association domain structure

Silvian, L.F.

(2008) Structure 16: 798-808

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Inhibitor of nuclear factor kappa-B kinase subunit beta,Inhibitor of nuclear factor kappa-B kinase subunit alpha (protein) NF-kappa-B essential modulator (protein)

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3BRV \| pdb_00003brv	Download File View File

NEMO/IKKb association domain structure

Silvian, L.F.

(2008) Structure 16: 798-808

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Inhibitor of nuclear factor kappa-B kinase subunit beta (protein) NF-kappa-B essential modulator (protein)

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3GBG \| pdb_00003gbg	Download File View File

Crystal Structure of ToxT from Vibrio Cholerae O395

Lowden, M.J., Kull, F.J.

(2010) Proc Natl Acad Sci U S A 107: 2860-2865

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae O395
Macromolecule	TCP pilus virulence regulatory protein (protein)
Unique Ligands	PAM

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4NJ5 \| pdb_00004nj5	Download File View File

Crystal structure of SUVH9

Du, J., Patel, D.J.

(2014) Nature 507: 124-128

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 (protein)
Unique Ligands	ZN

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4RP6 \| pdb_00004rp6	Download File View File

Structure of the amyloid-forming segment LTIITLE from p53 (residues 252-258)

Soriaga, A.B., Soragni, A., Eisenberg, D.

(2016) Cancer Cell 29: 90-103

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Homo sapiens
Macromolecule	LTIITLE heptapeptide segment from p53 (protein)

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4RP7 \| pdb_00004rp7	Download File View File

Structure of the amyloid-forming segment TIITLE from p53 (residues 253-258)

Soriaga, A.B., Soragni, A., Eisenberg, D.

(2016) Cancer Cell 29: 90-103

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.576 Å
Organisms	Homo sapiens
Macromolecule	TIITLE hexapeptide segment from p53 (protein)
Unique Ligands	ZN

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5WLP \| pdb_00005wlp	Download File View File

Solution structure of the pseudo-receiver domain of Atg32

Xue, X., Pellegrini, M., Ragusa, M.J.

(2018) Autophagy 14: 1620-1628

Released	2018-07-04
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 32 (protein)

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6MI3 \| pdb_00006mi3	Download File View File

Structure of NEMO(51-112) with N- and C-terminal coiled-coil adaptors.

Pellegrini, M., Barczewski, A.H., Mierke, D.F., Ragusa, M.J.

(2019) Sci Rep 9: 2950-2950

Released	2019-07-31
Method	X-RAY DIFFRACTION 1.783 Å
Organisms	Homo sapiens
Macromolecule	NF-kB ESSENTIAL MODULATOR,NF-kappa-B essential modulator,NF-kB ESSENTIAL MODULATOR (protein)

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6MI4 \| pdb_00006mi4	Download File View File

Structure of the I65M mutant of NEMO(51-112) with N- and C-terminal coiled-coil adaptors.

Pellegrini, M., Barczewski, A.H., Mierke, D.F., Ragusa, M.J.

(2019) Sci Rep 9: 2950-2950

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.50009425402 Å
Organisms	Homo sapiens
Macromolecule	NF-kB ESSENTIAL MODULATOR (protein)

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6NNB \| pdb_00006nnb	Download File View File

Solution structure of the Tudor domain of PSHCP

Bauer, K.M., Pelligrini, M., Ragusa, M.J.

(2019) J Biological Chem 294: 14333-14344

Released	2019-08-21
Method	SOLUTION NMR
Organisms	Prochlorococcus marinus str. MIT 9303
Macromolecule	Prochlorococcus/Synechococcus Hyper Conserved Protein (protein)

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6UTC \| pdb_00006utc	Download File View File

Intra-chain disulfide bonded ToxR periplasmic domain from Vibrio vulnificus

Midgett, C.R., Swindell, R.A., Kull, F.J.

(2020) Sci Rep 10: 9002-9002

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.249 Å
Organisms	Vibrio vulnificus
Macromolecule	Transcriptional activator ToxR (protein)
Unique Ligands	SO4

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6UUE \| pdb_00006uue	Download File View File

The Se-Met Structure of the Vibrio vulnificus ToxR periplasmic domain

Kull, F.J., Midgett, C.R., Swindell, R.A.

(2020) Sci Rep 10: 9002-9002

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.389 Å
Organisms	Vibrio vulnificus
Macromolecule	Transcriptional activator ToxR (protein)
Unique Ligands	SO4

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6W9N \| pdb_00006w9n	Download File View File

Solution structure of the FYVE domain of ALFY

Reinhart, E.F., Pellegrini, M., Ragusa, M.J.

(2021) Traffic 22: 23-37

Released	2020-12-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	WD repeat and FYVE domain-containing protein 3 (protein)
Unique Ligands	ZN

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6XA9 \| pdb_00006xa9	Download File View File

SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide

Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.

(2020) EMBO J 39: e106275-e106275

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	ISG15 CTD-propargylamide (protein) Non-structural protein 3 (protein)
Unique Ligands	GOL, ZN

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6XAA \| pdb_00006xaa	Download File View File

SARS CoV-2 PLpro in complex with ubiquitin propargylamide

Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.

(2020) EMBO J 39: e106275-e106275

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein) Ubiquitin-propargylamide (protein)
Unique Ligands	ZN

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AZV | pdb_00001azv

1BL1 | pdb_00001bl1

1D6G | pdb_00001d6g

1FBI | pdb_00001fbi

1FOZ | pdb_00001foz

1KEF | pdb_00001kef

2KMZ | pdb_00002kmz

2KN0 | pdb_00002kn0

2KN1 | pdb_00002kn1

2N5R | pdb_00002n5r

3BRT | pdb_00003brt

3BRV | pdb_00003brv

3GBG | pdb_00003gbg

4NJ5 | pdb_00004nj5

4RP6 | pdb_00004rp6

4RP7 | pdb_00004rp7

5WLP | pdb_00005wlp

6MI3 | pdb_00006mi3

6MI4 | pdb_00006mi4

6NNB | pdb_00006nnb

6UTC | pdb_00006utc

6UUE | pdb_00006uue

6W9N | pdb_00006w9n

6XA9 | pdb_00006xa9

6XAA | pdb_00006xaa