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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Peters, J.M."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (19)
	Saccharomyces cerevisiae (2)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Rattus norvegicus (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (19)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (6)
	2015 - 2019 (11)
	2020 - 2024 (2)

Enzyme Classification Name

Transferases (4)

Symmetry Type

	Asymmetric (17)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All alpha proteins (1)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 20 of 20 Structures

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1JHJ \| pdb_00001jhj	Download File View File

Crystal structure of the APC10/Doc1 subunit of the human anaphase-promoting complex

Wendt, K.S., Vodermaier, H.C., Jacob, U., Gieffers, C., Gmachl, M., Peters, J.-M., Huber, R., Sondermann, P.

(2001) Nat Struct Biol 8: 784-788

Released	2001-10-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	APC10 (protein)
Unique Ligands	NI

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2M6N \| pdb_00002m6n	Download File View File

3D solution structure of EMI1 (Early Mitotic Inhibitor 1)

Frye, J.J., Brown, N.G., Petzold, G., Watson, E.R., Royappa, G.R., Nourse, A., Jarvis, M., Kriwacki, R.W., Peters, J., Stark, H., Schulman, B.A.

(2013) Nat Struct Mol Biol 20: 827-835

Released	2013-05-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	F-box only protein 5 (protein)
Unique Ligands	ZN

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2MT5 \| pdb_00002mt5	Download File View File

Isolated Ring domain

Brown, N.G., Watson, E.R., Weissman, F., Royappa, G., Schulman, B., Jarvis, M., Vanderlinden, R., Frye, J.J., Qiao, R., Petzold, G., Peters, J., Stark, H.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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4R2Y \| pdb_00004r2y	Download File View File

Crystal structure of APC11 RING domain

Brown, N.G., Watson, E.R., Weissmann, F., Jarvis, M.A., Vanderlinden, R., Grace, C.R.R., Frye, J.J., Dube, P., Qiao, R., Petzold, G., Cho, S.E., Alsharif, O., Bao, J., Zheng, J., Nourse, A., Kurinov, I., Peters, J.M., Stark, H., Schulman, B.A.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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4RG6 \| pdb_00004rg6	Download File View File

Crystal structure of APC3-APC16 complex

Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.

(2015) J Mol Biology 427: 1748-1764

Released	2014-12-24
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 16 (protein) Cell division cycle protein 27 homolog (protein)

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4RG7 \| pdb_00004rg7	Download File View File

Crystal structure of APC3

Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.

(2015) J Mol Biology 427: 1748-1764

Released	2014-12-24
Method	X-RAY DIFFRACTION 4.25 Å
Organisms	Homo sapiens
Macromolecule	Cell division cycle protein 27 homolog (protein)

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4RG9 \| pdb_00004rg9	Download File View File

Crystal structure of APC3-APC16 complex (Selenomethionine Derivative)

Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.

(2015) J Mol Biology 427: 1748-1764

Released	2014-12-24
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 16 (protein) Cell division cycle protein 27 homolog (protein)

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5JG6 \| pdb_00005jg6	Download File View File

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C

Brown, N.G., Zhang, W., Yu, S., Miller, D.J., Sidhu, S.S., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.0013 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein) Polyubiquitin-B (protein)
Unique Ligands	ZN

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5KHR \| pdb_00005khr	Download File View File

Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)

VanderLinden, R., Yamaguchi, M., Dube, P., Haselbach, D., Stark, H., Schulman, B.A.

(2016) Mol Cell 63: 593-607

Released	2016-08-24
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 16

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5KHU \| pdb_00005khu	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution

Yamaguchi, M., VanderLinden, R., Dube, P., Stark, H., Schulman, B.

(2016) Mol Cell 63: 593-607

Released	2016-09-07
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 17

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5L9T \| pdb_00005l9t	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-10-26
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 17

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5L9U \| pdb_00005l9u	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-09-14
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Rattus norvegicus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 17

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6NXK \| pdb_00006nxk	Download File View File

Ubiquitin binding variants

Miller, D.J., Watson, E.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 2 (protein) Polyubiquitin-C (protein)

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6NXL \| pdb_00006nxl	Download File View File

Ubiquitin binding variants

Miller, D.J., Watson, E.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein)

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6OB1 \| pdb_00006ob1	Download File View File

Structure of WHB in complex with Ubiquitin Variant

Edmond, R.W., Grace, C.R.

(2019) Proc Natl Acad Sci U S A 116: 17280-17289

Released	2019-08-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 2 (protein) Ubiquitin (protein)

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6QB5 \| pdb_00006qb5	Download File View File

Crystal structure of the N-terminal region of human cohesin subunit STAG1

Newman, J.A., Katis, V.L., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2020) Life Sci Alliance 3:

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Cohesin subunit SA-1 (protein)
Unique Ligands	NA

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6R7O \| pdb_00006r7o	Download File View File

Crystal structure of the central region of human cohesin subunit STAG1

Newman, J.A., katis, V.L., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2020) Life Sci Alliance 3:

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Cohesin subunit SA-1 (protein)

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6RRC \| pdb_00006rrc	Download File View File

Crystal structure of the N-terminal region of human cohesin subunit STAG1 in complex with RAD21 peptide

Newman, J.A., Katis, V.L., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2020) Life Sci Alliance 3:

Released	2019-06-19
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	Cohesin subunit SA-1 (protein) Double-strand-break repair protein rad21 homolog (protein)
Unique Ligands	SO4

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6RRK \| pdb_00006rrk	Download File View File

Crystal structure of the central region of human cohesin subunit STAG1 in complex with RAD21 peptide

Newman, J.A., katis, V.L., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2020) Life Sci Alliance 3:

Released	2019-06-26
Method	X-RAY DIFFRACTION 3.17 Å
Organisms	Homo sapiens
Macromolecule	Cohesin subunit SA-1 (protein) Double-strand-break repair protein rad21 homolog (protein)

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6SDK \| pdb_00006sdk	Download File View File

Crystal structure of bacterial ParB dimer bound to CDP

Soh, Y.M., Basquin, J., Gruber, S.

(2019) Science 366: 1129-1133

Released	2019-10-23
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Stage 0 sporulation protein J (protein)
Unique Ligands	CA, CDP

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1JHJ | pdb_00001jhj

Crystal structure of the APC10/Doc1 subunit of the human anaphase-promoting complex

2M6N | pdb_00002m6n

3D solution structure of EMI1 (Early Mitotic Inhibitor 1)

2MT5 | pdb_00002mt5

Isolated Ring domain

4R2Y | pdb_00004r2y

Crystal structure of APC11 RING domain

4RG6 | pdb_00004rg6

Crystal structure of APC3-APC16 complex

4RG7 | pdb_00004rg7

Crystal structure of APC3

4RG9 | pdb_00004rg9

Crystal structure of APC3-APC16 complex (Selenomethionine Derivative)

5JG6 | pdb_00005jg6

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C

5KHR | pdb_00005khr

Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)

5KHU | pdb_00005khu

Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution

5L9T | pdb_00005l9t

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

5L9U | pdb_00005l9u

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

6NXK | pdb_00006nxk

Ubiquitin binding variants

6NXL | pdb_00006nxl

Ubiquitin binding variants

6OB1 | pdb_00006ob1

Structure of WHB in complex with Ubiquitin Variant

6QB5 | pdb_00006qb5

Crystal structure of the N-terminal region of human cohesin subunit STAG1

6R7O | pdb_00006r7o

Crystal structure of the central region of human cohesin subunit STAG1

6RRC | pdb_00006rrc

Crystal structure of the N-terminal region of human cohesin subunit STAG1 in complex with RAD21 peptide

6RRK | pdb_00006rrk

Crystal structure of the central region of human cohesin subunit STAG1 in complex with RAD21 peptide

6SDK | pdb_00006sdk

Crystal structure of bacterial ParB dimer bound to CDP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1JHJ | pdb_00001jhj

2M6N | pdb_00002m6n

2MT5 | pdb_00002mt5

4R2Y | pdb_00004r2y

4RG6 | pdb_00004rg6

4RG7 | pdb_00004rg7

4RG9 | pdb_00004rg9

5JG6 | pdb_00005jg6

5KHR | pdb_00005khr

5KHU | pdb_00005khu

5L9T | pdb_00005l9t

5L9U | pdb_00005l9u

6NXK | pdb_00006nxk

6NXL | pdb_00006nxl

6OB1 | pdb_00006ob1

6QB5 | pdb_00006qb5

6R7O | pdb_00006r7o

6RRC | pdb_00006rrc

6RRK | pdb_00006rrk

6SDK | pdb_00006sdk